Alternatives and similar repositories for engineered-riboregulator-ML

Users that are interested in engineered-riboregulator-ML are comparing it to the libraries listed below

• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆49Updated 6 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 11 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆93Updated last year
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆46Updated 3 months ago
• DennisGankin / species-aware-DNA-LM
  Species-aware DNA language modeling
  ☆18Updated 2 years ago
• ntranoslab / esm-variants
  ☆74Updated last year
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆41Updated 6 months ago
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆62Updated last year
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆66Updated 2 years ago
• eternagame / DegScore
  Arnie-based DegScore tool.
  ☆26Updated 2 years ago
• hendrixlab / bpRNA
  bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
  ☆49Updated last year
• DasLab / RiboGraphViz
  Visualize global properties of large RNAs using GraphViz force-directed layout.
  ☆21Updated last year
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆48Updated 3 weeks ago
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆64Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆66Updated 7 years ago
• soedinglab / uniclust-pipeline
  ☆39Updated 7 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• allydunham / sequence_unet
  Fully convolutional deep learning variant effect predictor architecture
  ☆23Updated last year
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆39Updated 10 months ago
• TattaBio / gLM2
  ☆70Updated 9 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆46Updated 5 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆53Updated last year
• Doudna-lab / GARNET_DL
  ☆35Updated 6 months ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• google-research / proteinfer
  Deep networks for protein functional inference
  ☆175Updated last month
• kundajelab / DART-Eval
  ☆35Updated 2 months ago
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆95Updated 2 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆37Updated 2 weeks ago