RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
☆28Jun 4, 2025Updated 9 months ago
Alternatives and similar repositories for RHermes
Users that are interested in RHermes are comparing it to the libraries listed below
Sorting:
- A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Feb 26, 2026Updated last week
- BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)☆19May 12, 2023Updated 2 years ago
- QC systems for metabolomics studies☆11Sep 17, 2025Updated 5 months ago
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆16Apr 25, 2023Updated 2 years ago
- Creating and using (chemical) compound databases☆19Mar 2, 2026Updated last week
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 8 years ago
- ☆28Nov 30, 2023Updated 2 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆12Nov 20, 2025Updated 3 months ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆13Updated this week
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Jan 7, 2026Updated 2 months ago
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- A collection of common mz values found in mass spectrometry.☆20Jun 13, 2024Updated last year
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Jan 20, 2026Updated last month
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Sep 6, 2022Updated 3 years ago
- Spectral entropy for mass spectrometry data.☆36Dec 25, 2025Updated 2 months ago
- Metabolomics Tools for Galaxy☆21Nov 22, 2016Updated 9 years ago
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆15Jun 1, 2023Updated 2 years ago
- Shiny app for retention time prediction☆11Dec 1, 2025Updated 3 months ago
- Mass spectral library manager☆13Apr 9, 2020Updated 5 years ago
- PyMassSpec extension for searching mass spectra using NIST's Mass Spectrum Search Engine.☆22Jan 20, 2026Updated last month
- data processing for MS-based metabolomics☆15Nov 10, 2024Updated last year
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- CoreMS is a comprehensive mass spectrometry software framework☆64Feb 9, 2026Updated last month
- High level functionality to support and simplify metabolomics data annotation.☆19Mar 2, 2026Updated last week
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- The R for Mass Spectrometry meta-package☆18Dec 24, 2023Updated 2 years ago
- Knowledge-guided multilayer network approach is executed in MetDNA2☆16Nov 5, 2022Updated 3 years ago
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Jan 21, 2021Updated 5 years ago
- LipidFinder: A computational workflow for discovery of new lipid molecular species☆21Feb 14, 2021Updated 5 years ago
- Core Utils for Mass Spectrometry Data☆17Mar 2, 2026Updated last week
- Retip - Retention Time prediction for metabolomics☆32Jun 6, 2024Updated last year
- metabolite identification R-package for metabolomic high-resolution LC-MS datasets.☆16Apr 19, 2017Updated 8 years ago
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆20Jul 6, 2023Updated 2 years ago
- Flash entropy search☆16Sep 24, 2023Updated 2 years ago
- PeakBot - detection of chromatographic and mz profile-mode peaks in LC-HRMS data☆22Feb 9, 2022Updated 4 years ago
- a python package for molecular formula analysis in MS-based small molecule studies☆33Jan 28, 2026Updated last month
- ☆55Apr 15, 2021Updated 4 years ago
- Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry☆21Nov 15, 2016Updated 9 years ago
- pathway and network analysis for metabolomics☆43Dec 8, 2025Updated 3 months ago