mhahsler / rBLAST
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
☆103Updated 4 months ago
Related projects: ⓘ
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆186Updated 6 months ago
- Publication-quality sequence logos in R☆202Updated 7 months ago
- functions to analyse sanger sequencing reads in R☆96Updated 5 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆104Updated 3 weeks ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆100Updated this week
- ☆157Updated 3 years ago
- 𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …☆60Updated 11 months ago
- Visualize and annotate genomic coverage with ggplot2☆224Updated 3 months ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆116Updated 4 years ago
- R data package for annotating/converting Gene IDs☆160Updated last year
- A grammar of genomic data transformation☆137Updated 5 months ago
- Genome wide orthology inference and dNdS estimation☆88Updated 11 months ago
- R package for microbiome biomarker discovery☆169Updated 10 months ago
- Analyzing and visualizing KEGG information using the grammar of graphics☆210Updated 2 weeks ago
- Integrated Differential Expression and Pathway analysis☆122Updated this week
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆164Updated last month
- Visualizing transcript structure and annotation using ggplot2☆130Updated 3 weeks ago
- Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology☆92Updated 2 months ago
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆86Updated 4 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Visualizing publication-quality multiple sequence alignment using ggplot2☆199Updated 2 years ago
- Import qiime2 artifacts to R☆156Updated 2 months ago
- R implementation of the LEfSe method☆43Updated this week
- Training material for introductory R / Bioconductor courses☆72Updated last year
- quantitative PCR analysis in the tidyverse☆50Updated 3 months ago
- ☆70Updated 2 years ago
- Retrieving Information of Proteins from Uniprot☆57Updated 6 months ago
- website for the rnaseq course☆91Updated 3 weeks ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆69Updated 2 years ago
- ☆32Updated last week