mdozmorov / MDnotes
Links to all data science, genomics, and other notes
☆46Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for MDnotes
- Estimation of Promoter Activity from RNA-Seq data☆49Updated 2 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 6 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- A continually expanding collection of RNA-seq tools☆46Updated last month
- An R interface to the MEME Suite☆46Updated last month
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated 6 months ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Updated 3 years ago
- published papers with a lot of data☆62Updated this week
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 5 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆29Updated 11 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆85Updated 3 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆50Updated 3 years ago
- ☆47Updated 3 years ago
- documentation for trackViewer☆29Updated 5 years ago
- Workshop • Analysis of RNA-seq data☆34Updated 8 months ago
- Tutorial Website☆53Updated 3 years ago
- workshop website on readthedocs☆19Updated last week
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- ☆25Updated last year
- ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).☆26Updated 2 years ago
- A list of alternative splicing analysis resources☆37Updated last week
- ☆22Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆101Updated 3 months ago
- ATAC-seq Quality Control☆23Updated 3 weeks ago
- Pipeline for the analysis of PE ChIP-seq data☆14Updated 4 years ago
- 🧬 Gene analysis toolkit based on R☆53Updated 2 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Website for the precision medicine workshop☆43Updated last week
- R package containing useful functions for mutational signature analysis☆80Updated this week