mdozmorov / MDnotes
Links to all data science, genomics, and other notes
☆50Updated 4 months ago
Alternatives and similar repositories for MDnotes:
Users that are interested in MDnotes are comparing it to the libraries listed below
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Updated 3 years ago
- A continually expanding collection of RNA-seq tools☆48Updated 6 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 11 months ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- ☆22Updated 4 years ago
- My youtube programming scripts☆52Updated 3 months ago
- documentation for trackViewer☆29Updated 5 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- 🧬 Gene analysis toolkit based on R☆56Updated 3 months ago
- Website for the precision medicine workshop☆45Updated 5 months ago
- Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis☆40Updated 3 years ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆51Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 4 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆50Updated last month
- ☆27Updated last year
- ATAC-seq Quality Control☆23Updated 3 months ago
- An R interface to the MEME Suite☆50Updated 6 months ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆26Updated 4 months ago
- published papers with a lot of data☆68Updated 2 weeks ago
- Bioinformatics one-liner for 100 days☆47Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- workshop website on readthedocs☆19Updated 2 months ago
- Bayesian network plot for the enrichment analysis results☆64Updated 6 months ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- collection of notebooks with different cytoscape workflows☆49Updated 2 years ago