Alternatives and similar repositories for E-MTAB-3610

Users that are interested in E-MTAB-3610 are comparing it to the libraries listed below

• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆28Updated 2 years ago
• kstawiski / OmicSelector
  OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …
  ☆35Updated last week
• AstraZeneca / Omicsfold
  Multi-omics data normalisation, model fitting and visualisation.
  ☆26Updated 2 years ago
• choisy / cutoff
  R package: determining cutoff values from bimodal data
  ☆11Updated last year
• ropensci / UCSCXenaTools
  An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…
  ☆109Updated last week
• Vivianstats / scDesign
  A statistical simulator for rational scRNA-seq experimental design
  ☆12Updated 4 years ago
• cBioPortal / 2020-cbioportal-r-workshop
  Workshop materials for cBioPortal Webinar 5: API & R Client
  ☆19Updated 5 years ago
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆80Updated last month
• casecpb / KSEA
  Kinase-Substrate Enrichment Analysis (KSEA) App
  ☆10Updated 8 years ago
• AprilYuge / ResPAN
  a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction
  ☆15Updated 2 years ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆23Updated last month
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆23Updated last year
• CamaraLab / TDA-TCGA
  R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
  ☆10Updated 3 years ago
• ocbe-uio / DIscBIO
  A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
  ☆12Updated last year
• carpentries-incubator / high-dimensional-stats-r
  High-dimensional statistics with R
  ☆11Updated 2 weeks ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆24Updated 3 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆22Updated 7 months ago
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆30Updated last year
• liuhong-jia / scAnno
  ☆25Updated 2 months ago
• anhtr / HPAanalyze
  A Bioconductor package to retrieve and analyze data from the Human Protein Atlas
  ☆38Updated 3 months ago
• pkimes / sigclust2
  tests for statistical significance of clustering
  ☆38Updated 6 years ago
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆22Updated 9 months ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆29Updated 7 months ago
• Drinchai / BloodGen3Module
  This R package for performing module repertoire analyses and generating fingerprint representations
  ☆16Updated 3 years ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated 2 months ago
• MangiolaLaboratory / HPCell
  Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R
  ☆13Updated 8 months ago
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆38Updated 2 years ago
• peterawe / CMScaller
  ☆31Updated 5 years ago
• SaccoPerfettoLab / SignalingProfiler
  SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.
  ☆15Updated 2 months ago
• drighelli / SpatialExperiment
  ☆66Updated 3 months ago