Alternatives and similar repositories for E-MTAB-3610:

Users that are interested in E-MTAB-3610 are comparing it to the libraries listed below

• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆25Updated last year
• AstraZeneca / Omicsfold
  Multi-omics data normalisation, model fitting and visualisation.
  ☆24Updated last year
• peterawe / CMScaller
  ☆26Updated 4 years ago
• sanderlab / tumorcomparer
  A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.
  ☆13Updated 2 years ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆24Updated 3 weeks ago
• CamaraLab / TDA-TCGA
  R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
  ☆10Updated 3 years ago
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆26Updated 6 months ago
• diegommcc / digitalDLSorteR
  digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data
  ☆10Updated 3 months ago
• igordot / babelgene
  ☆11Updated 2 years ago
• jtextor / epitope-prediction
  R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.
  ☆15Updated 4 years ago
• AlexsLemonade / OpenPBTA-manuscript
  The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
  ☆13Updated last year
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆13Updated 3 years ago
• unistbig / netGO
  R/Shiny package for network-integrated pathway enrichment analysis
  ☆14Updated 4 years ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆18Updated 2 months ago
• Vivianstats / scDesign
  A statistical simulator for rational scRNA-seq experimental design
  ☆11Updated 4 years ago
• keyes-timothy / tidytof
  An R package for analyzing high-dimensional cytometry data using the tidyverse.
  ☆19Updated 5 months ago
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆21Updated last month
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated 2 months ago
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• liuhong-jia / scAnno
  ☆23Updated last year
• ropensci / UCSCXenaTools
  An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…
  ☆107Updated 3 months ago
• OrsolyaVincze / VinczeEtal2021Nature
  ☆8Updated 3 years ago
• elakatos / NeoepProcessing
  Collection of scripts for pre- and postprocessing neoantigen discovery calls.
  ☆9Updated 5 years ago
• MarioniLab / ImmuneAging2017
  Code for Celia and Nils' immune aging project.
  ☆9Updated 5 years ago
• pkimes / sigclust2
  tests for statistical significance of clustering
  ☆37Updated 6 years ago
• DongqiangZeng0808 / Blasso
  Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers
  ☆20Updated 2 years ago
• kstawiski / OmicSelector
  OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …
  ☆35Updated 2 months ago
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆43Updated 6 months ago