stephenslab / fastTopicsLinks
Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
☆83Updated last week
Alternatives and similar repositories for fastTopics
Users that are interested in fastTopics are comparing it to the libraries listed below
Sorting:
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 9 months ago
- Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more☆109Updated last year
- ☆95Updated last year
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 3 months ago
- ☆74Updated last year
- Quantify and interpret divers of variation in multilevel gene expression experiments☆67Updated 2 months ago
- Clone of the Bioconductor repository for the basilisk package.☆29Updated 2 months ago
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆110Updated 3 weeks ago
- Extension of SpatialExperiment with sf☆55Updated last month
- An R package for multivariate adaptive shrinkage.☆92Updated 11 months ago
- ☆71Updated 5 months ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆31Updated 3 years ago
- plotthis is an R package that is built upon ggplot2 and other plotting packages.☆72Updated last week
- Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).☆80Updated last year
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Updated 2 years ago
- An R package to create forestplots of measures of effects with their confidence intervals.☆64Updated 4 years ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Updated 3 years ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated last month
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- An R package providing programmatic access to Synapse☆37Updated 3 months ago
- Single-cell analysis with non-negative matrix factorization☆45Updated 3 months ago
- Toolkit for Single-Cell Velocity☆59Updated 3 months ago
- Fit Gamma-Poisson Generalized Linear Models Reliably☆116Updated 7 months ago
- Gene-level general linear mixed model☆23Updated 3 weeks ago
- Interactive Cytometry Data Analysis☆67Updated 3 weeks ago
- BioC2020: Where Software and Biology Connect☆12Updated 2 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆14Updated 10 months ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 2 months ago