stephenslab / fastTopicsLinks
Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
☆84Updated last month
Alternatives and similar repositories for fastTopics
Users that are interested in fastTopics are comparing it to the libraries listed below
Sorting:
- Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more☆110Updated last year
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 11 months ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- ☆95Updated last year
- Extension of SpatialExperiment with sf☆56Updated 2 weeks ago
- ☆71Updated 6 months ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Updated 3 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆69Updated 3 weeks ago
- ☆74Updated last year
- Clone of the Bioconductor repository for the basilisk package.☆29Updated last month
- Single-cell analysis with non-negative matrix factorization☆45Updated 4 months ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆31Updated 4 years ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Updated last month
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- plotthis is an R package that is built upon ggplot2 and other plotting packages.☆78Updated last week
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 3 months ago
- Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).☆82Updated last year
- An R package for multivariate adaptive shrinkage.☆91Updated last year
- R package for computation of (adjusted) rand-index and other such scores☆27Updated 3 weeks ago
- Implementation of the matrixStats API for sparse matrices☆54Updated 8 months ago
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆111Updated 2 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆15Updated last year
- Gene-level general linear mixed model☆23Updated 2 months ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- Toolkit for Single-Cell Velocity☆58Updated 5 months ago
- flowWorkspace☆45Updated 9 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆21Updated last year
- Fit Gamma-Poisson Generalized Linear Models Reliably☆119Updated 9 months ago