Alternatives and similar repositories for fastTopics

Users that are interested in fastTopics are comparing it to the libraries listed below

• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated 5 months ago
• zdebruine / RcppML
  Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
  ☆106Updated last year
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆63Updated 4 months ago
• SaskiaFreytag / schex
  ☆74Updated last year
• pwwang / plotthis
  plotthis is an R package that is built upon ggplot2 and other plotting packages.
  ☆50Updated this week
• markrobinsonuzh / cytofWorkflow
  ☆16Updated last year
• willtownes / glmpca
  ☆94Updated last year
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated 2 weeks ago
• const-ae / sparseMatrixStats
  Implementation of the matrixStats API for sparse matrices
  ☆54Updated 2 months ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆45Updated 2 years ago
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆26Updated 2 years ago
• SingleR-inc / SingleRBook-base
  See https://github.com/LTLA/SingleRBook for the latest version of this content.
  ☆11Updated 2 years ago
• milescsmith / ReductionWrappers
  R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
  ☆37Updated 5 months ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• NightingaleHealth / ggforestplot
  An R package to create forestplots of measures of effects with their confidence intervals.
  ☆60Updated 4 years ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆31Updated 3 years ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆44Updated 7 months ago
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆92Updated 6 months ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆56Updated 5 months ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆21Updated 4 months ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆23Updated 5 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated last year
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆67Updated last year
• drighelli / SpatialExperiment
  ☆64Updated last week
• dynverse / dynwrap
  A common data format and inference environment for single-cell trajectories 📦
  ☆16Updated last year
• Sage-Bionetworks / synapser
  An R package providing programmatic access to Synapse
  ☆35Updated this week
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated last year
• Bioconductor / OrchestratingSingleCellAnalysis-release
  An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
  ☆36Updated 2 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 6 months ago