cellimnet / scellseg-publishLinks
A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.
☆10Updated last year
Alternatives and similar repositories for scellseg-publish
Users that are interested in scellseg-publish are comparing it to the libraries listed below
Sorting:
- Piecewise alignment for layers of mosaics☆29Updated last month
- ☆34Updated last year
- ☆32Updated 2 months ago
- QuPath extension for Cellsparse☆19Updated 5 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- A collection of resources on bioimage analysis and related tools and techniques☆14Updated 2 years ago
- ☆19Updated 11 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Raw format to OME-TIFF converter☆56Updated last month
- The official QuPath extension for InstanSeg☆26Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year
- Cloud-based data annotation tools for biological images☆81Updated last year
- ☆28Updated 5 months ago
- Microsopic Image Analyzer (MIA)☆28Updated last month
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆31Updated 3 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 4 months ago
- multimodal whole slide image registration in a graph structure☆94Updated last year
- Evaluating the quality of a cell segmentation method without reference.☆12Updated 2 months ago
- An introduction to deepcell and deep learning☆153Updated 11 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆110Updated this week
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- ☆23Updated 2 years ago
- ☆31Updated 4 years ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 5 months ago
- Integrated pipeline for multiplexed image analysis☆96Updated 6 months ago
- CODEX data processing code☆12Updated 3 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆56Updated 11 months ago
- ☆85Updated 6 months ago
- Unsupervised Instance Segmentation in Microscopy☆24Updated last year