A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.
☆10Apr 19, 2024Updated last year
Alternatives and similar repositories for scellseg-publish
Users that are interested in scellseg-publish are comparing it to the libraries listed below
Sorting:
- Microsnoop: A generalist tool for microscopy image representation☆11Feb 27, 2025Updated last year
- UNet script, model, sample data☆14Feb 19, 2025Updated last year
- ☆13Dec 7, 2021Updated 4 years ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- rna2seg☆20May 15, 2025Updated 9 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- NuLite - Lightweight and Fast Model for Nuclei Instance Segmentation and Classification☆30Jan 19, 2026Updated last month
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆30Feb 28, 2026Updated last week
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Feb 12, 2026Updated 3 weeks ago
- ☆32Jul 31, 2025Updated 7 months ago
- ☆209Jun 29, 2023Updated 2 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39May 7, 2024Updated last year
- ☆37Dec 13, 2023Updated 2 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Updated this week
- A deep learning model for single cell segmentation from microsopy images.☆36Updated this week
- Multidigraph learning (MDGL) for training recurrent spiking neural networks☆14Dec 18, 2021Updated 4 years ago
- Non-disruptive collagen characterization in clinical histopathology using cross-modality image synthesis☆10Apr 25, 2025Updated 10 months ago
- ☆11Nov 2, 2023Updated 2 years ago
- https://nutil.readthedocs.io/en/latest/☆13Feb 18, 2026Updated 2 weeks ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- Few-Shot Object Detection with Transformer☆10Jan 3, 2024Updated 2 years ago
- Website for the MIT/Harvard Computational Neuroscience Journal Club☆11Apr 7, 2025Updated 11 months ago
- Single-cell spatial omics analysis that makes you happy!☆52Updated this week
- Python wrapper for Origin files loader library.☆16Nov 15, 2022Updated 3 years ago
- Semi-continuous deployment of my PhD dissertation☆12Feb 13, 2025Updated last year
- ☆10Nov 29, 2022Updated 3 years ago
- [BIB 2023] scDFC: A deep fusion clustering method for single-cell RNA-seq data☆10Nov 27, 2025Updated 3 months ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated last year
- ☆13Jan 22, 2026Updated last month
- Workshop materials for "I2K 2022: From Images to Knowledge" conference☆11May 3, 2022Updated 3 years ago
- Create your ITU course schedules in fashion with up-to-date & detailed information.☆14Apr 14, 2025Updated 10 months ago
- Create diagrams and visualizations using text and code. Powered by mermaid.js.☆11Mar 16, 2024Updated last year
- load an image from lif file as a numpy array☆10Jun 2, 2022Updated 3 years ago
- A framework that facilitates flexible natural language parsing. Currently used as a foundation for other projects.☆10Sep 30, 2024Updated last year
- ☆12Jul 6, 2023Updated 2 years ago
- MICCAI 2023: Morphology-inspired Unsupervised Gland Segmentation via Selective Semantic Grouping☆10Sep 27, 2025Updated 5 months ago
- kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical Trials☆15May 27, 2025Updated 9 months ago
- Jupyter notebooks about Machine and Deep Learning in healthcare☆10Nov 2, 2024Updated last year