cellimnet / scellseg-publishLinks
A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.
☆10Updated last year
Alternatives and similar repositories for scellseg-publish
Users that are interested in scellseg-publish are comparing it to the libraries listed below
Sorting:
- ☆32Updated 5 months ago
- ☆19Updated last year
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆25Updated last year
- QuPath extension for Cellsparse☆19Updated 8 months ago
- Piecewise alignment for layers of mosaics☆29Updated 4 months ago
- ☆36Updated 2 years ago
- Unsupervised Instance Segmentation in Microscopy☆25Updated last year
- A collection of resources on bioimage analysis and related tools and techniques☆14Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Raw format to OME-TIFF converter☆56Updated last month
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- collection of mass spectrometry imaging workflows☆20Updated 3 weeks ago
- Cloud-based data annotation tools for biological images☆83Updated last year
- ☆24Updated 2 years ago
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
- ☆31Updated 4 years ago
- multimodal whole slide image registration in a graph structure☆97Updated last year
- Microsopic Image Analyzer (MIA)☆28Updated 4 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- The official QuPath extension for InstanSeg☆29Updated 2 months ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 8 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last month
- ☆21Updated 6 months ago
- An introduction to deepcell and deep learning☆155Updated last year
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- ☆25Updated 2 years ago
- Evaluating the quality of a cell segmentation method without reference.☆12Updated 5 months ago