cellimnet / scellseg-publishLinks
A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.
☆10Updated last year
Alternatives and similar repositories for scellseg-publish
Users that are interested in scellseg-publish are comparing it to the libraries listed below
Sorting:
- ☆33Updated last year
- Piecewise alignment for layers of mosaics☆27Updated last week
- QuPath extension for Cellsparse☆19Updated 2 months ago
- ☆32Updated 2 years ago
- ☆19Updated 8 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated 11 months ago
- Transfer trained StarDist models across imaging modalities☆3Updated 9 months ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- A collection of resources on bioimage analysis and related tools and techniques☆14Updated 2 years ago
- ☆23Updated 2 years ago
- ☆31Updated 4 years ago
- multimodal whole slide image registration in a graph structure☆87Updated last year
- Segment Anything for Histopathology☆34Updated last month
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 2 months ago
- ☆26Updated 2 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆98Updated this week
- Raw format to OME-TIFF converter☆54Updated last month
- The official QuPath extension for InstanSeg☆22Updated 2 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- rna2seg☆16Updated 2 months ago
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 9 months ago
- An introduction to deepcell and deep learning☆150Updated 8 months ago
- Integrated pipeline for multiplexed image analysis☆91Updated 3 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 5 months ago
- Evaluating the quality of a cell segmentation method without reference.☆12Updated 2 months ago
- Microsopic Image Analyzer (MIA)☆29Updated last year
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆73Updated 3 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆118Updated 6 months ago