matdoering / openPrimeRLinks
An R Package for Multiplex PCR Primer Design and Analysis
☆27Updated this week
Alternatives and similar repositories for openPrimeR
Users that are interested in openPrimeR are comparing it to the libraries listed below
Sorting:
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆52Updated 7 months ago
- pathway based data integration and visualization☆41Updated 3 months ago
- ☆17Updated last year
- Evolutionary Transcriptomics with R☆44Updated last week
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆28Updated last year
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated last year
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated 2 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- visual analysis of your VCF files☆34Updated 2 years ago
- Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions☆65Updated last year
- ☆16Updated last week
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated 8 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- gatk4 RNA variant calling pipeline☆50Updated last week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆22Updated last month
- Nanopore Real-Time Analysis Tool☆15Updated 10 months ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago