A recast of cell segmentation models built on the Burn deep learning framework.
☆23Jul 30, 2026Updated last week
Alternatives and similar repositories for cellcast
Users that are interested in cellcast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fast and open-source scientific image processing and algorithm library.☆16Jul 31, 2026Updated last week
- Interprocess environment manager 🧊☆15May 11, 2026Updated 2 months ago
- Java implementation of Appose ☕☆15Jun 24, 2026Updated last month
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated last month
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆26Updated this week
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Updated this week
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated last month
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆24Jul 7, 2026Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 8 months ago
- Lab for quantitative bioimage analysis experiments in Python☆20Feb 16, 2026Updated 5 months ago
- Accelerated CellStitch for 3D labeling of anisotropic image stacks☆15Mar 1, 2026Updated 5 months ago
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Mar 6, 2026Updated 5 months ago
- A fully scalable robust image feature extraction library.☆29Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- python tools for BigDataViewer☆23Jul 2, 2026Updated last month
- An introduction to OME-Zarr for big bioimaging data☆27Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆20Jun 16, 2025Updated last year
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Conda Environment MAnager, a library to execute code in isolated environments.☆24Updated this week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- A distributed application framework for large-scale data management and AI model serving☆24Updated this week
- Segment images utilizing pre-trained neural networks as feature extractors☆52Jul 3, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 8 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆183Jul 30, 2026Updated last week
- Full Docs @ https://skalalab.github.io/flim_playground_doc/☆16Updated this week
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 weeks ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆126Updated this week
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 8 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆15Jul 30, 2026Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆66Oct 27, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Scientific Dataset Quality Control and Data Exploration Tool☆25Updated this week
- A WebGPU-native out-of-core rendering system for large virtualized volumetric data.☆58Jul 14, 2026Updated 3 weeks ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆74Jul 15, 2026Updated 3 weeks ago
- ☆14Jan 27, 2024Updated 2 years ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated 2 months ago
- An open-source Python library for the analysis of luminescence lifetime and hyperspectral images using the phasor approach.☆42Aug 1, 2026Updated last week
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆130Updated this week