Alternatives and similar repositories for microbial-counting-review:

Users that are interested in microbial-counting-review are comparing it to the libraries listed below

• ponnhide / PySanger
  A Python module to analyze Sanger sequencing results.
  ☆24Updated last year
• DormanLab / AmpliCI
  AmpliCI, a model-based algorithm for denoising Illumina amplicon data.
  ☆22Updated 3 months ago
• tao-bioinfo / PrimerServer2
  PrimerServer2: a high-throughput primer design and specificity-checking platform
  ☆77Updated 2 years ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆46Updated last month
• Searchlight2 / Searchlight2
  Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.
  ☆26Updated 5 months ago
• hym0405 / CAMII
  ☆15Updated 2 years ago
• icebert / pblat
  parallelized blat with multi-threads support
  ☆52Updated last month
• epi2me-labs / wf-16s
  ☆29Updated 2 months ago
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆57Updated last month
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆41Updated last year
• schmeing / ReSeq
  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
  ☆52Updated 2 years ago
• nf-core / circrna
  circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
  ☆52Updated 3 weeks ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated 3 months ago
• fmalmeida / bacannot
  Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
  ☆100Updated last week
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆36Updated this week
• mitenjain / nanopore
  UCSC Nanopore group's software pipeline for reference-based sequence analysis
  ☆53Updated 9 years ago
• PacificBiosciences / pbAA
  ☆24Updated 3 months ago
• smithlabcode / falco
  A C++ drop-in replacement of FastQC to assess the quality of sequence read data
  ☆100Updated 3 months ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆54Updated 2 years ago
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆65Updated 6 months ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆72Updated this week
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆46Updated last week
• mattloose / flowcellvis
  Animated GIF of flow cell performance from sequencing summary file.
  ☆13Updated 7 years ago
• zhpn1024 / ribotish
  Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
  ☆35Updated 2 months ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 9 months ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆80Updated 3 weeks ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆55Updated 2 months ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated last week
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆45Updated this week