A list of useful resources in the microbial colony classification and detection, such as datasets, papers, links to projects
☆27Oct 1, 2022Updated 3 years ago
Alternatives and similar repositories for microbial-counting-review
Users that are interested in microbial-counting-review are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- code used to generate synthetic microbiological dataset in the paper "Generation of microbial colonies dataset with deep learning style t…☆20Jan 25, 2024Updated 2 years ago
- Python package for the quantificatin of number of colonies☆22Apr 10, 2024Updated last year
- A Python script to count bacterial colonies on agar plates☆22Jan 22, 2024Updated 2 years ago
- An image analysis tool for measuring microorganism colony growth☆12Dec 12, 2025Updated 3 months ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 4 months ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 7 months ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆11Apr 25, 2024Updated last year
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Dec 18, 2021Updated 4 years ago
- For computational analysis of bacterial RNA-seq data☆12Jul 14, 2017Updated 8 years ago
- ☆11Jul 3, 2023Updated 2 years ago
- Self-Updating Platform for the Estimation of Rates of Speciation, Migration And Relationships of Taxa☆17Jun 24, 2020Updated 5 years ago
- ☆11Jan 17, 2025Updated last year
- Graph Splitting Method☆13Jul 10, 2019Updated 6 years ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Sep 7, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- The ProteoCancer Analysis Suite (PCAS) utilizes the CPTAC database to integrate proteomics, phosphoproteomics, and transcriptomics for ca…☆21Jun 18, 2025Updated 9 months ago
- A Matlab implementation for automatic segmentation with a graphical user interface☆16Apr 7, 2019Updated 7 years ago
- A trajectory generator for Cartesian linear motions that can apply overlay motions written in C++ and with ROS bindings☆17Jun 21, 2023Updated 2 years ago
- ☆15Jun 13, 2025Updated 9 months ago
- Pathogenicity prediction of bacterial genomes☆17Jun 27, 2018Updated 7 years ago
- Animated GIF of flow cell performance from sequencing summary file.☆13Feb 20, 2018Updated 8 years ago
- Assign taxonomy with blast, can be used for qiime☆25Mar 25, 2025Updated last year
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- C++ reflection library with focus on serialization/configuration (ROS parameters, YAML, JSON, XML, etc)☆18Mar 30, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Oct 17, 2024Updated last year
- A Package for Ribosome Profiling Data Analysis☆18Jan 17, 2026Updated 2 months ago
- Bayesian modelling of bipartite networks☆13Jan 22, 2025Updated last year
- Effector prediction pipeline based on protein properties.☆15Jul 18, 2025Updated 8 months ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 5 months ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 2 weeks ago
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Oct 19, 2019Updated 6 years ago