A GNN model that executes simplification algorithms used in the layout phase of de novo genome assembly process.
☆11May 24, 2021Updated 4 years ago
Alternatives and similar repositories for NeuralLayout
Users that are interested in NeuralLayout are comparing it to the libraries listed below
Sorting:
- Official code for the paper `Neural Algorithmic Reasoning for Combinatorial Optimisation`☆21Nov 27, 2023Updated 2 years ago
- Hypergraph Factorisation☆26Nov 28, 2024Updated last year
- ☆25Jul 15, 2021Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 4 years ago
- ☆11Oct 28, 2021Updated 4 years ago
- ☆10Mar 2, 2021Updated 4 years ago
- Official codebase for "Context Aware Deep Learning for Multi Modal Depression Detection" [ICASSP 2019, Oral]☆11Dec 26, 2024Updated last year
- GPU Debugging SDK for ROCm☆10Mar 21, 2019Updated 6 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- ☆13Mar 12, 2020Updated 5 years ago
- Code for the paper "SizeShiftReg: a Regularization Method for Improving Size-Generalization in Graph Neural Networks"☆12Jan 17, 2023Updated 3 years ago
- ☆12Apr 2, 2018Updated 7 years ago
- ☆11Mar 4, 2021Updated 4 years ago
- A Teaching Engine for Genomics☆12Mar 21, 2021Updated 4 years ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 5 years ago
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Jan 17, 2022Updated 4 years ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Feb 6, 2026Updated 3 weeks ago
- PASTASpark is an extension to PASTA (Practical Alignments using SATé and TrAnsitivity) that allows to execute it on a distributed memory …☆10Mar 19, 2019Updated 6 years ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- Samples for Apache Spark GraphX library☆10Apr 30, 2016Updated 9 years ago
- Slides, Code, and Exercises to support [R Quickstart tutorial](http://conferences.oreilly.com/strata/hadoop-big-data-ca/public/schedule/d…☆10Mar 25, 2016Updated 9 years ago
- Implementation of Supervised embedding models from [Learning End-to-End Goal-Oriented Dialog] paper.☆14Feb 25, 2019Updated 7 years ago
- Program to find drug-like RNA-ligand binding pockets.☆23Aug 5, 2025Updated 6 months ago
- Notebook on finding fraud in credit card transactions☆14Sep 6, 2019Updated 6 years ago
- ICLR 2021☆48Mar 18, 2021Updated 4 years ago
- HSAIL Instruction Set Simulator - for testing execution of HSAIL Brig files☆36Sep 18, 2014Updated 11 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Official Implementation of "Transferring Inductive Biases Through Knowledge Distillation"☆15Jun 3, 2020Updated 5 years ago
- Chroma Protein Diffusion Model☆12Nov 16, 2023Updated 2 years ago
- Implementation of Centered Kernel Alignment (CKA)☆10Apr 7, 2021Updated 4 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 4 years ago
- ☆11Jun 21, 2022Updated 3 years ago
- Repo to hold HammerBlade PyTorch port. Based on PyTorch v1.4.0☆14Oct 4, 2022Updated 3 years ago
- Labs assignments☆12Jul 11, 2017Updated 8 years ago
- ☆10Apr 20, 2018Updated 7 years ago
- ☆11Jun 17, 2015Updated 10 years ago
- GeneBac: a modular framework for predicting antibiotic resistance from DNA sequence.☆16Jan 3, 2024Updated 2 years ago
- ☆12Jun 13, 2024Updated last year
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Dec 9, 2025Updated 2 months ago