soedinglab / b-lore
Bayesian multiple logistic regression for GWAS meta-analysis
☆16Updated last year
Related projects ⓘ
Alternatives and complementary repositories for b-lore
- Metagenome analysis using the Kraken software suite☆29Updated 2 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆26Updated 6 years ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆20Updated 3 weeks ago
- ☆29Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- ☆56Updated last month
- ☆17Updated 3 years ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆22Updated last year
- Python bindings for the TaxonKit library☆31Updated 3 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Protein Alignment and Detection Interface☆61Updated 7 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆29Updated last year
- Locus and lineage tests for bacterial GWAS☆30Updated 7 years ago
- ☆22Updated 8 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated 2 months ago
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated last year
- Django website project for common sequence search tools.☆17Updated last month
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆23Updated 3 months ago
- Interactive tutorials for using scikit-bio in biological research☆19Updated 4 months ago
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆40Updated 10 months ago
- A pipeline for structural clustering of RNA secondary structures☆14Updated 3 years ago
- Bacterial Annotation by Learned Representation of Genes☆54Updated 3 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆85Updated 2 years ago
- This repository contains all CWL descriptions of the MGnify pipeline version 5.0.☆22Updated 3 weeks ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- A tool for summarizing, extracting, generating and modifying DNA sequences.☆23Updated 3 weeks ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆20Updated 5 years ago
- MGnify API toolkit☆21Updated 8 months ago