luyiyun / NormAEView external linksLinks
Batch effects removal method based on deep autoencoder and adversarial learning
☆24Dec 28, 2024Updated last year
Alternatives and similar repositories for NormAE
Users that are interested in NormAE are comparing it to the libraries listed below
Sorting:
- MetNormalizer is used to normalize large scale metabolomics data.☆22Mar 3, 2021Updated 4 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆25Jun 3, 2025Updated 8 months ago
- ☆15Jun 3, 2021Updated 4 years ago
- ☆23Jan 27, 2026Updated 2 weeks ago
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- Nextflow-powered MS-DIAL☆10Jan 13, 2025Updated last year
- Assigning precursor-product ion relationships in indiscriminant MS/MS data☆13Jan 23, 2026Updated 3 weeks ago
- ☆12Nov 16, 2021Updated 4 years ago
- Annotation of in source LC/MS data☆12Oct 19, 2024Updated last year
- QC systems for metabolomics studies☆11Sep 17, 2025Updated 4 months ago
- ☆14Nov 7, 2024Updated last year
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated 8 months ago
- ☆28Nov 30, 2023Updated 2 years ago
- Tool for reliability assessment of omics peprocessing☆11Jan 13, 2026Updated last month
- metaX: a flexible and comprehensive software for processing omics data.☆26Jun 16, 2023Updated 2 years ago
- GC/LC-MS data analysis for environmental science☆17May 20, 2025Updated 8 months ago
- Set of Galaxy tool wrappers developed at RECETOX☆13Feb 6, 2026Updated last week
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆31Dec 29, 2019Updated 6 years ago
- Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, …☆15Nov 13, 2018Updated 7 years ago
- All the source code of MetDNA.☆20Mar 1, 2022Updated 3 years ago
- Realtime quality control for mass spectrometry data acquisition☆21Nov 17, 2025Updated 2 months ago
- BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)☆19May 12, 2023Updated 2 years ago
- A programmable and modular LC/MS simulator in Python☆24Feb 7, 2026Updated last week
- This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…☆46Dec 15, 2025Updated last month
- LC-MS data processing tool for large-scale metabolomics experiments.☆91Jul 11, 2022Updated 3 years ago
- Interactive software to analyze and browse mass spectrometry data☆21Jul 3, 2025Updated 7 months ago
- A collection of common mz values found in mass spectrometry.☆20Jun 13, 2024Updated last year
- MassBank of North America (MoNA) is a metadata-centric, auto-curating repository designed for efficient storage and querying of mass spec…☆20Jan 29, 2026Updated 2 weeks ago
- asari, metabolomics data preprocessing☆58Jan 29, 2026Updated 2 weeks ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆60Jul 13, 2024Updated last year
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21May 19, 2025Updated 8 months ago
- Mass spectrometry imaging toolbox☆69Nov 9, 2025Updated 3 months ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆105Dec 31, 2018Updated 7 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆30Jan 5, 2025Updated last year
- Organic/biological mass spectrometry data analysis (development version).☆32Jan 27, 2026Updated 2 weeks ago
- Software for the analysis and interactive exploration of spectral imaging data☆32Aug 25, 2020Updated 5 years ago
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆71Feb 5, 2026Updated last week
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆137Nov 7, 2025Updated 3 months ago