Urinx / alphafold_pytorch
An implementation of the DeepMind's AlphaFold based on PyTorch for research
☆394Updated 4 years ago
Alternatives and similar repositories for alphafold_pytorch:
Users that are interested in alphafold_pytorch are comparing it to the libraries listed below
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆680Updated 2 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆259Updated 3 years ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆304Updated last year
- Remote protein homology detection suite.☆560Updated 4 months ago
- ProSPr: Protein Structure Prediction☆420Updated 2 years ago
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆547Updated 7 months ago
- UniRep model, usage, and examples.☆348Updated 2 years ago
- To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released☆1,596Updated 2 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆536Updated last year
- A package to predict protein inter-residue geometries from sequence data☆213Updated 3 years ago
- An all-atom protein structure dataset for machine learning.☆349Updated 11 months ago
- A PyTorch framework for prediction of tertiary protein structure☆184Updated 3 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆631Updated 8 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆351Updated 9 months ago
- Get protein embeddings from protein sequences☆478Updated last year
- Code for the ProteinMPNN paper☆1,185Updated 7 months ago
- ☆194Updated 3 years ago
- An open-source platform for developing protein models beyond AlphaFold.☆382Updated 8 months ago
- ColabFold on your local PC☆665Updated last week
- OmegaFold Release Code☆567Updated 2 years ago
- A deep learning framework for molecular docking☆671Updated last week
- AlphaFold2 non-docker setup☆352Updated last year
- Deep functional residue identification☆315Updated last year
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,179Updated last month
- ☆522Updated last year
- trRosetta for protein design☆177Updated 3 years ago
- Making Protein Design accessible to all via Google Colab!☆695Updated 2 weeks ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆348Updated last year
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆496Updated 3 weeks ago
- Listing of papers about machine learning for proteins.☆1,587Updated 9 months ago