An implementation of the DeepMind's AlphaFold based on PyTorch for research
☆402Jan 23, 2021Updated 5 years ago
Alternatives and similar repositories for alphafold_pytorch
Users that are interested in alphafold_pytorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MiniFold: Deep Learning for Protein Structure Prediction inspired by DeepMind AlphaFold algorithm☆219Mar 25, 2021Updated 4 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- ProSPr: Protein Structure Prediction☆418Oct 6, 2022Updated 3 years ago
- ☆18Nov 24, 2019Updated 6 years ago
- This package contains deep learning models and related scripts for RoseTTAFold☆2,235Feb 15, 2024Updated 2 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503☆574Jul 10, 2023Updated 2 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- Deep learning prediction of protein residue-residue distances☆23Jun 28, 2022Updated 3 years ago
- Open source code for AlphaFold 2.☆14,381Mar 13, 2026Updated last week
- UniRep model, usage, and examples.☆361Mar 1, 2026Updated 3 weeks ago
- PyTorch library of layers acting on protein representations☆119Jun 30, 2024Updated last year
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- ☆21Jul 16, 2020Updated 5 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,293May 22, 2025Updated 10 months ago
- Trainable AlphaFold implementation in JAX☆158Aug 6, 2022Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆734Dec 11, 2022Updated 3 years ago
- An all-atom protein structure dataset for machine learning.☆360Mar 16, 2024Updated 2 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Jan 26, 2022Updated 4 years ago
- DLPacker☆32Aug 26, 2024Updated last year
- This repository contains implementations and illustrative code to accompany DeepMind publications☆14,765Mar 17, 2026Updated last week
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,314Dec 16, 2025Updated 3 months ago
- trRosetta for protein design☆184May 15, 2021Updated 4 years ago
- Standardized data set for machine learning of protein structure☆910Nov 18, 2020Updated 5 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,009Feb 7, 2024Updated 2 years ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305May 1, 2025Updated 10 months ago
- ☆192Feb 8, 2022Updated 4 years ago
- ☆29Jul 10, 2020Updated 5 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated last year
- Attempt at reproduction of AlphaFold2☆99Oct 23, 2024Updated last year
- Listing of papers about machine learning for proteins.☆1,691May 31, 2024Updated last year
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆59Oct 17, 2022Updated 3 years ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- ☆17Dec 13, 2020Updated 5 years ago
- Deep ResNet-based protein contact prediction☆20Mar 30, 2020Updated 5 years ago
- Implementation of the method proposed in the paper "Efficient Multi-Objective Molecular Optimization in a Continuous Latent Space" by Rob…☆81Apr 13, 2021Updated 4 years ago
- ☆16Aug 14, 2019Updated 6 years ago