Alternatives and similar repositories for alphafold_pytorch:

Users that are interested in alphafold_pytorch are comparing it to the libraries listed below

• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆347Updated 11 months ago
• salesforce / provis
  Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."
  ☆304Updated last year
• tbepler / protein-sequence-embedding-iclr2019
  Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
  ☆259Updated 3 years ago
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆213Updated 3 years ago
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆677Updated 2 years ago
• lucidrains / alphafold2
  To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  ☆1,592Updated 2 years ago
• dptech-corp / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆379Updated 7 months ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆475Updated last year
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆624Updated 7 months ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆535Updated 6 months ago
• dellacortelab / prospr
  ProSPr: Protein Structure Prediction
  ☆420Updated 2 years ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆349Updated 2 years ago
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆560Updated 3 months ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆534Updated last year
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆487Updated last year
• biolib / openprotein
  A PyTorch framework for prediction of tertiary protein structure
  ☆184Updated 3 years ago
• dptech-corp / Uni-Fold-jax
  Trainable AlphaFold implementation in JAX
  ☆159Updated 2 years ago
• gnina / gnina
  A deep learning framework for molecular docking
  ☆664Updated 2 months ago
• a-r-j / graphein
  Protein Graph Library
  ☆1,061Updated 2 weeks ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆347Updated 8 months ago
• jonathanking / protein-transformer
  Predicting protein structure through sequence modeling
  ☆111Updated 4 years ago
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,170Updated 5 months ago
• Biomatter-Designs / ProteinGAN
  ☆193Updated 3 years ago
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆564Updated 2 years ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆250Updated last year
• lucidrains / protein-bert-pytorch
  Implementation of ProteinBERT in Pytorch
  ☆155Updated 3 years ago
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆648Updated 3 weeks ago
• insilicomedicine / GENTRL
  Generative Tensorial Reinforcement Learning (GENTRL) model
  ☆612Updated 6 months ago
• lucidrains / enformer-pytorch
  Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
  ☆459Updated 4 months ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆250Updated last year