An implementation of the DeepMind's AlphaFold based on PyTorch for research
☆402Jan 23, 2021Updated 5 years ago
Alternatives and similar repositories for alphafold_pytorch
Users that are interested in alphafold_pytorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released☆1,631Oct 29, 2022Updated 3 years ago
- MiniFold: Deep Learning for Protein Structure Prediction inspired by DeepMind AlphaFold algorithm☆220Mar 25, 2021Updated 5 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- ProSPr: Protein Structure Prediction☆419Oct 6, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆18Nov 24, 2019Updated 6 years ago
- This package contains deep learning models and related scripts for RoseTTAFold☆2,246Feb 15, 2024Updated 2 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503☆580Apr 3, 2026Updated 2 months ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- Deep learning prediction of protein residue-residue distances☆23Jun 28, 2022Updated 3 years ago
- UniRep model, usage, and examples.☆365Mar 1, 2026Updated 3 months ago
- Open source code for AlphaFold 2.☆14,662Apr 22, 2026Updated last month
- PyTorch library of layers acting on protein representations☆119Jun 30, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- ☆21Jul 16, 2020Updated 5 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,310May 22, 2025Updated last year
- Trainable AlphaFold implementation in JAX☆158Aug 6, 2022Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆739Dec 11, 2022Updated 3 years ago
- An all-atom protein structure dataset for machine learning.☆365Mar 16, 2024Updated 2 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Jan 26, 2022Updated 4 years ago
- DLPacker☆33Aug 26, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- This repository contains implementations and illustrative code to accompany DeepMind publications☆15,017Updated this week
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,375Dec 16, 2025Updated 5 months ago
- Standardized data set for machine learning of protein structure☆916Nov 18, 2020Updated 5 years ago
- trRosetta for protein design☆183May 15, 2021Updated 5 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,114Feb 7, 2024Updated 2 years ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305May 1, 2025Updated last year
- Implementation of E(n)-Transformer, which incorporates attention mechanisms into Welling's E(n)-Equivariant Graph Neural Network☆226Jun 2, 2024Updated 2 years ago
- ☆189Feb 8, 2022Updated 4 years ago
- ☆29Jul 10, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆53Mar 7, 2025Updated last year
- Attempt at reproduction of AlphaFold2☆98Oct 23, 2024Updated last year
- Listing of papers about machine learning for proteins.☆1,707May 31, 2024Updated 2 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆60Oct 17, 2022Updated 3 years ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- ☆17Dec 13, 2020Updated 5 years ago
- Deep ResNet-based protein contact prediction☆19Mar 30, 2020Updated 6 years ago