Urinx / alphafold_pytorchLinks
An implementation of the DeepMind's AlphaFold based on PyTorch for research
☆400Updated 4 years ago
Alternatives and similar repositories for alphafold_pytorch
Users that are interested in alphafold_pytorch are comparing it to the libraries listed below
Sorting:
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆302Updated 5 months ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆719Updated 2 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆261Updated 4 years ago
- UniRep model, usage, and examples.☆355Updated 3 years ago
- A PyTorch framework for prediction of tertiary protein structure☆190Updated 4 years ago
- Get protein embeddings from protein sequences☆498Updated 2 years ago
- An all-atom protein structure dataset for machine learning.☆355Updated last year
- Recurrent Geometric Networks for end-to-end differentiable learning of protein structure☆325Updated 6 years ago
- ProSPr: Protein Structure Prediction☆419Updated 3 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆554Updated last year
- ☆190Updated 3 years ago
- An open-source platform for developing protein models beyond AlphaFold.☆397Updated last year
- A package to predict protein inter-residue geometries from sequence data☆217Updated 4 years ago
- ☆555Updated 6 months ago
- Remote protein homology detection suite.☆594Updated last month
- The new source code of the LinearFold, linear-time prediction for RNA secondary structures☆179Updated last year
- OmegaFold Release Code☆598Updated 2 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆689Updated last year
- To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released☆1,621Updated 2 years ago
- Predicting protein structure through sequence modeling☆112Updated 5 years ago
- Implementation of ProteinBERT in Pytorch☆162Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,257Updated 4 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆365Updated last year
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Updated 4 years ago
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆155Updated last year
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆518Updated 7 months ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆113Updated last year
- Generative Tensorial Reinforcement Learning (GENTRL) model☆623Updated last year
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆617Updated last year
- A collection of *fold* tools☆300Updated 2 months ago