Urinx / alphafold_pytorchLinks
An implementation of the DeepMind's AlphaFold based on PyTorch for research
☆396Updated 4 years ago
Alternatives and similar repositories for alphafold_pytorch
Users that are interested in alphafold_pytorch are comparing it to the libraries listed below
Sorting:
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆260Updated 4 years ago
- An all-atom protein structure dataset for machine learning.☆353Updated last year
- UniRep model, usage, and examples.☆352Updated 3 years ago
- ☆193Updated 3 years ago
- ProSPr: Protein Structure Prediction☆419Updated 2 years ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆301Updated last month
- A PyTorch framework for prediction of tertiary protein structure☆187Updated 4 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆702Updated 2 years ago
- Remote protein homology detection suite.☆573Updated 7 months ago
- An open-source platform for developing protein models beyond AlphaFold.☆394Updated last year
- Get protein embeddings from protein sequences☆494Updated 2 years ago
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆510Updated 4 months ago
- A package to predict protein inter-residue geometries from sequence data☆215Updated 3 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆545Updated last year
- Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models☆898Updated 11 months ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆660Updated last year
- RoseTTAFold2 protein/nucleic acid complex prediction☆359Updated last year
- To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released☆1,608Updated 2 years ago
- Trainable AlphaFold implementation in JAX☆159Updated 2 years ago
- The official implementation of the Molecule Attention Transformer.☆246Updated 5 years ago
- The new source code of the LinearFold, linear-time prediction for RNA secondary structures☆172Updated last year
- OmegaFold Release Code☆587Updated 2 years ago
- Recurrent Geometric Networks for end-to-end differentiable learning of protein structure☆327Updated 5 years ago
- A deep learning framework for molecular docking☆732Updated last week
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆120Updated 3 years ago
- A collection of *fold* tools☆293Updated 9 months ago
- Protein Graph Library☆1,106Updated this week
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆169Updated last year
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆114Updated last year
- ☆247Updated 10 months ago