tiwarylab / simple-diffusionLinks
Demo of diffusion models #DDPM applied to molecular dynamics of small peptide
☆14Updated 2 years ago
Alternatives and similar repositories for simple-diffusion
Users that are interested in simple-diffusion are comparing it to the libraries listed below
Sorting:
- Geometric super-resolution for molecular geometries☆42Updated 3 years ago
- Target-aware Variational Auto-encoders for Ligand Generation with Multimodal Protein Representation Learning☆32Updated last year
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Updated 9 months ago
- ☆30Updated 3 weeks ago
- Code for the combinatorial synthesis library variational auto-encoder (CSLVAE) as described in the paper, "An efficient graph generative …☆14Updated 2 years ago
- Flow-matching for coarse graining of miniproteins.☆19Updated 3 years ago
- Set of tools to generate a multi-eGO force field to perform molecular dynamics simulations☆14Updated last week
- Tools to build coarse grained models and perform simulations with OpenMM☆25Updated 3 years ago
- Implementation of Differentiable Molecular Simulations with torchMD.☆16Updated 2 years ago
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆20Updated 9 months ago
- The GB99dms implicit solvent force field for proteins, plus scripts and data☆26Updated 4 months ago
- Run OpenMM with forces provided by any Python program☆38Updated last year
- EC-Conf: An Ultra-fast Diffusion Model for Molecular conformation Generation with Equivariant Consistency☆12Updated last year
- ☆10Updated 9 months ago
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆21Updated last year
- The Expanded Package for IET Solvation☆13Updated last year
- ☆18Updated 2 years ago
- ☆13Updated 6 months ago
- ☆31Updated 2 years ago
- Multiscale Simulation Tool for Backmapping☆22Updated last week
- Discontinuous Molecular Dynamics (DMD) Simulation Package☆15Updated 3 years ago
- A new python package to visualize molecules in dots hover☆13Updated last year
- A tutorials suite for BioSimSpace.☆34Updated 3 months ago
- Open-source docking pipeline leveraging pairwise statistics☆15Updated last year
- ☆14Updated last year
- An efficient approach to RMSD-Based HDBSCAN Clustering of long Molecular Dynamics☆17Updated 3 years ago
- Denoising diffusion probabilistic models for replica exchange☆25Updated 3 years ago
- easyPARM is a computational tool developed to simplify the derivation of force field parameters for metal-containing molecular systems an…☆32Updated 2 weeks ago
- Molecular Property Prediction using GP with a SOAP kernel☆21Updated 5 years ago
- Free Parametrization for Small Molecules☆50Updated this week