Protein-Protein Language Model with Novel Attention Mechanisms for Enhanced Inter-Protein Contact and Interaction Prediction
☆64Jul 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for PPLM
Users that are interested in PPLM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Mar 20, 2025Updated last year
- ☆15Jun 25, 2026Updated last month
- PLM-interact: extending protein language models to predict protein-protein interactions.☆72Aug 29, 2025Updated 11 months ago
- Baseline model for PPB-Affinity benchmark data☆43May 21, 2025Updated last year
- Learning the language of protein-protein interactions☆153Jun 15, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆43Jul 28, 2025Updated last year
- The pytorch code of TDFold☆21Feb 25, 2026Updated 5 months ago
- PPI version of Pythia☆35Jun 13, 2026Updated last month
- ☆24Jul 8, 2025Updated last year
- de novo design of high affinity biological binders☆194Jun 22, 2026Updated last month
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆135Jan 28, 2026Updated 6 months ago
- [NeurIPS 2025] PRING: Rethinking Protein-Protein Interaction Prediciton from Pairs to Graphs☆23Oct 1, 2025Updated 10 months ago
- Monoclonal Antibody GEnerator (MAGE) - a fine-tuned LLM for generating paired heavy-light antibody variable sequences with predicted bind…☆79Jan 15, 2026Updated 6 months ago
- AbBiBench (Antibody Binding Benchmarking), a benchmarking framework for optimizing antibody binding affinity.☆42May 14, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆16Jun 3, 2025Updated last year
- Official repository of "ODesign: A World Model for Biomolecular Interaction Design"☆329Jul 1, 2026Updated last month
- All-atom generative protein design using SE(3) flow matching☆27Feb 3, 2026Updated 6 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆85May 27, 2026Updated 2 months ago
- ☆118Jan 3, 2026Updated 7 months ago
- FoldBench is a low-homology benchmark spanning proteins, nucleic acids, ligands, and six major interaction types, enabling assessments th…☆146May 9, 2026Updated 3 months ago
- ☆174Jul 24, 2026Updated 2 weeks ago
- a universal molecular interaction modeling platform based on AlphaFold3, supporting structure prediction and analysis for various recepto…☆49Nov 20, 2025Updated 8 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆119Feb 19, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆22Mar 30, 2024Updated 2 years ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆130Oct 30, 2025Updated 9 months ago
- Code for humanization of antibody and nanobody☆92Aug 28, 2025Updated 11 months ago
- ☆81Jun 10, 2026Updated 2 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆270Jul 24, 2025Updated last year
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- An Open-source Drug Discovery Engine☆398Updated this week
- A fine-tuned version of ProteinMPNN for generating stable cyclic peptide sequences☆45Jun 30, 2026Updated last month
- AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg inte…☆33Jun 23, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 3 years ago
- ☆37Jan 15, 2023Updated 3 years ago
- Pytorch reimplementation of AlphaFold3☆27May 7, 2026Updated 3 months ago
- Potts model-based protein sequence design☆109Jul 1, 2026Updated last month
- ☆19Apr 3, 2026Updated 4 months ago
- A cyclic peptide-protein complex dataset derived from AFDB.☆66Mar 17, 2026Updated 4 months ago
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆148Jul 10, 2026Updated last month