Alternatives and similar repositories for bgen

Users that are interested in bgen are comparing it to the libraries listed below

• bvilhjal / ldpred
  ☆102Updated 3 years ago
• shz9 / viprs
  Variational Inference of Polygenic Risk Scores
  ☆28Updated 9 months ago
• AlexTISYoung / snipar
  Imputation of parental genotypes, inference of sibling IBD segments, family based GWAS, and polygenic score analyses.
  ☆38Updated 4 months ago
• weizhou0 / GATE
  ☆23Updated 2 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• zhilizheng / SBayesRC
  ☆47Updated 7 months ago
• jeremymcrae / bgen
  fast bgen parser for python
  ☆16Updated last month
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆62Updated 3 months ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆77Updated last month
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆97Updated last year
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆115Updated 3 years ago
• hakyim / TO-DELETE-PrediXcan
  Code for the in-dev PrediXcan Project
  ☆28Updated 3 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆54Updated 6 months ago
• MichelNivard / awesome-complex-trait-genetics
  A list of awesome tools for complex trait genetics.
  ☆83Updated last year
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆97Updated 2 months ago
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆51Updated 3 years ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆89Updated this week
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆29Updated this week
• joepickrell / 1000-genomes-genetic-maps
  Genetic maps interpolated to sites in the 1000 Genomes project
  ☆52Updated 10 years ago
• EBISPOT / gwas-summary-statistics-standard
  Documentation on new GWAS Summary Statistics Standard
  ☆23Updated 2 months ago
• jianyangqt / gcta
  GCTA software
  ☆106Updated 7 months ago
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆84Updated 3 years ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆202Updated last year
• dvitale199 / GenoTools
  GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…
  ☆31Updated 2 weeks ago
• EBISPOT / gwas-sumstats-harmoniser
  GWAS Summary Statistics Data Harmonisation
  ☆25Updated last month
• joepickrell / gwas-pw
  Pariwise analysis of GWAS
  ☆46Updated 7 years ago
• dougspeed / LDAK
  ☆39Updated this week
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆51Updated 10 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆71Updated last week
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆198Updated last year