This is the implementation of PointIso model presented in the paper "Deep neural network for detecting arbitrary precision peptide features through attention based segmentation" (https://www.nature.com/articles/s41598-021-97669-7 and https://arxiv.org/abs/2009.07250). For any inquiry about running the codes, contact me (Fatema): fzohora@uwaterlo…
☆10Dec 24, 2022Updated 3 years ago
Alternatives and similar repositories for PointIso
Users that are interested in PointIso are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 4 years ago
- ☆17Apr 27, 2022Updated 4 years ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆48Nov 4, 2026Updated last week
- ☆10Oct 28, 2026Updated 2 weeks ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Jun 27, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Oct 22, 2026Updated 3 weeks ago
- Libraries for fine isotopic structure calculator.☆48Nov 5, 2026Updated last week
- Ready-to-deploy models including Segment Anything 3, Depth Anything 2 and Gemma.☆11Oct 12, 2026Updated last month
- Convert ThermoFinningan RAW mass spectrometry files to the mzXML format☆17Nov 8, 2023Updated 3 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Mar 26, 2026Updated 7 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆53Sep 1, 2026Updated 2 months ago
- PyArrow bindings for nanobind☆11Oct 11, 2026Updated last month
- ☆12Jun 13, 2024Updated 2 years ago
- Implementation of a simple flow and RealNVP☆10Feb 21, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ProXL Web App -- Visualize and Share Protein Cross-linking Data☆13Nov 5, 2026Updated last week
- This is a python script that allows for batch processing of AlphaFold3 output files☆20Oct 13, 2024Updated 2 years ago
- Homomer symmetry prediction from protein sequence☆47Mar 13, 2025Updated last year
- CSS-LM: Contrastive Semi-supervised Fine-tuning of Pre-trained Language Models☆11Jul 1, 2023Updated 3 years ago
- ☆16May 27, 2026Updated 5 months ago
- An extension of the ProteoWizard framework enabling the support of the mzDB format☆14Feb 12, 2021Updated 5 years ago
- [NeurIPS'22] PyTorch library to compare similarity between NN representations☆13Feb 27, 2025Updated last year
- A Linear Gaussian State Space Model (LGSSM) for pytorch, also known as a Linear Dynamical System (LDS)☆13May 17, 2021Updated 5 years ago
- Soar-SC, Soar Starcraft AI☆14Jun 4, 2013Updated 13 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Wrapper object for "structure of arrays" coding style☆16Sep 26, 2020Updated 6 years ago
- High-performance Rust + Python readers for mass spectrometry / proteomics raw data.☆16Updated this week
- 恩布即时通讯软件，企业协同办公平台 http://www.entboost.com☆11Jan 22, 2017Updated 9 years ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆81Oct 25, 2026Updated 2 weeks ago
- Automated Collision Cross Section calculation software for ion mobility spectrometry-mass spectrometry☆12Dec 13, 2024Updated last year
- View point in Open source in Proteomics☆11Feb 5, 2025Updated last year
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆41Jun 10, 2026Updated 5 months ago
- A collection of Rust-C++ interoperability examples, from basic integration to advanced concurrency patterns. Easily build and run in a co…☆21Aug 19, 2024Updated 2 years ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13Nov 2, 2026Updated last week
- Python package for efficient mass spectrometry data processing and visualization☆169Aug 18, 2026Updated 2 months ago
- HealthFC: Verifying Health Claims with Evidence-Based Medical Fact-Checking☆15Apr 11, 2025Updated last year
- EuBIC-MS Developers Meeting 2025 on Computational Mass Spectrometry☆11Nov 8, 2024Updated 2 years ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆54Oct 12, 2021Updated 5 years ago
- Peak detection for untargeted metabolomics using Neural Network. High-level API based on peakonly by @Arseha.☆17Feb 28, 2026Updated 8 months ago
- Pure-Rust reader for Thermo Fisher .raw mass-spectrometry files, with Python bindings.☆17Updated this week
Are these results useful?