This is the implementation of PointIso model presented in the paper "Deep neural network for detecting arbitrary precision peptide features through attention based segmentation" (https://www.nature.com/articles/s41598-021-97669-7 and https://arxiv.org/abs/2009.07250). For any inquiry about running the codes, contact me (Fatema): fzohora@uwaterlo…
☆10Dec 24, 2022Updated 3 years ago
Alternatives and similar repositories for PointIso
Users that are interested in PointIso are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Apr 27, 2022Updated 4 years ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 4 years ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆48Oct 5, 2026Updated last week
- ☆10Aug 27, 2026Updated last month
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Jun 27, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Libraries for fine isotopic structure calculator.☆48Oct 6, 2026Updated last week
- ☆17Updated this week
- This is a python script that allows for batch processing of AlphaFold3 output files☆20Oct 13, 2024Updated 2 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Sep 1, 2026Updated last month
- Convert ThermoFinningan RAW mass spectrometry files to the mzXML format☆17Nov 8, 2023Updated 2 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Mar 26, 2026Updated 6 months ago
- Homomer symmetry prediction from protein sequence☆46Mar 13, 2025Updated last year
- ☆31Jul 24, 2026Updated 2 months ago
- An extension of the ProteoWizard framework enabling the support of the mzDB format☆14Feb 12, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Jun 13, 2024Updated 2 years ago
- ProXL Web App -- Visualize and Share Protein Cross-linking Data☆13Sep 11, 2026Updated last month
- ☆16May 27, 2026Updated 4 months ago
- A Linear Gaussian State Space Model (LGSSM) for pytorch, also known as a Linear Dynamical System (LDS)☆13May 17, 2021Updated 5 years ago
- Turn research papers into verifiable knowledge graphs with AI.☆39Oct 10, 2026Updated last week
- CSS-LM: Contrastive Semi-supervised Fine-tuning of Pre-trained Language Models☆11Jul 1, 2023Updated 3 years ago
- Wrapper object for "structure of arrays" coding style☆16Sep 26, 2020Updated 6 years ago
- [NeurIPS'22] PyTorch library to compare similarity between NN representations☆13Feb 27, 2025Updated last year
- A collection of Rust-C++ interoperability examples, from basic integration to advanced concurrency patterns. Easily build and run in a co…☆21Aug 19, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- EuBIC-MS Developers Meeting 2025 on Computational Mass Spectrometry☆11Nov 8, 2024Updated last year
- DeepLC: Retention time prediction for peptides carrying any modification.☆80Oct 11, 2026Updated last week
- Python package for efficient mass spectrometry data processing and visualization☆169Aug 18, 2026Updated 2 months ago
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13Updated this week
- Distant Reader, a tool for using & understanding a corpus☆20Jan 10, 2023Updated 3 years ago
- A library for deisotoping and charge state deconvolution of complex mass spectra☆43Jul 30, 2025Updated last year
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆41Jun 10, 2026Updated 4 months ago
- 恩布即时通讯软件,企业协同办公平台 http://www.entboost.com☆11Jan 22, 2017Updated 9 years ago
- HealthFC: Verifying Health Claims with Evidence-Based Medical Fact-Checking☆14Apr 11, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- Peak detection for untargeted metabolomics using Neural Network. High-level API based on peakonly by @Arseha.☆17Feb 28, 2026Updated 7 months ago
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 6 years ago
- pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.☆52Apr 9, 2026Updated 6 months ago
- The ProteoWizard Library and Tools are a set of modular and extensible open-source, cross-platform tools and software libraries that faci…☆22Aug 25, 2023Updated 3 years ago
- ☆13Dec 13, 2022Updated 3 years ago
- Synthetic mzML writer☆14Mar 10, 2025Updated last year