peptide-MHC modeling, binding prediction, and protein design.
☆32Jul 24, 2026Updated last month
Alternatives and similar repositories for PMGen
Users that are interested in PMGen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Jun 11, 2026Updated 2 months ago
- ☆13Updated this week
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- ☆21Oct 26, 2024Updated last year
- Humanness of de-novo designed proteins☆47May 19, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Rank binders by structure modeling☆17Apr 10, 2026Updated 4 months ago
- Antigen-receptor Design Against Peptide-MHC Targets☆21Jan 9, 2026Updated 7 months ago
- JAX translation of boltz☆31Aug 11, 2026Updated 3 weeks ago
- Fast protein backbone flexibility prediction model☆36Jan 4, 2026Updated 7 months ago
- [𝐧𝐚𝐭𝐮𝐫𝐞 𝐦𝐚𝐜𝐡𝐢𝐧𝐞 𝐢𝐧𝐭𝐞𝐥𝐥𝐢𝐠𝐞𝐧𝐜𝐞] ImmunoStruct enables multimodal deep learning for immunogenicity prediction☆49Mar 5, 2026Updated 5 months ago
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆43Aug 17, 2026Updated 2 weeks ago
- mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence con…☆143Apr 27, 2026Updated 4 months ago
- Propose CDR single-point mutations that rescue antibody expression without disrupting antigen binding, using bound vs. unbound ProteinMPN…☆15May 26, 2026Updated 3 months ago
- [ICLR'26] Towards All-Atom Foundation Models for Biomolecular Binding Affinity Prediction☆23Jul 9, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Combines FRESEAN mode analysis of a protein (based on a CG representation) with enhanced sampling using metadynamics☆17May 7, 2026Updated 3 months ago
- Latents-based conformational control in OpenFold3.☆79May 25, 2026Updated 3 months ago
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆16Aug 28, 2025Updated last year
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆262Jan 3, 2026Updated 7 months ago
- Bayesian Optimization for protein design and mining☆28Jul 2, 2026Updated last month
- AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks☆39Jun 4, 2025Updated last year
- Feynman-Kac steering for controllable protein diffusion☆37Aug 16, 2026Updated 2 weeks ago
- ☆77May 18, 2026Updated 3 months ago
- Longxing Cao's Contact Molecular Surface without pyrosetta☆15May 24, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆29Nov 20, 2025Updated 9 months ago
- EnsembleFlex - Flexibility Analysis of Structure Ensembles☆19Sep 10, 2025Updated 11 months ago
- Metrics for our protein design competitions.☆36Nov 1, 2024Updated last year
- AlphaBind code + model accompanying pre-print☆94Jul 24, 2025Updated last year
- Lightweight induced fit docking☆22May 22, 2023Updated 3 years ago
- ☆59Aug 19, 2026Updated last week
- EvolveX, a de novo antibody computational design pipeline.☆24Sep 18, 2025Updated 11 months ago
- Biomolecular design by sampling from generative models☆52Updated this week
- Official PyTorch implementation of "ProteinMAE: Masked Autoencoder for Protein Surface Self-supervised Learning".☆19May 7, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PPI version of Pythia☆36Jun 13, 2026Updated 2 months ago
- Alchemical Free Energy Calculations with Grand Canonical Ensemble☆20May 2, 2026Updated 3 months ago
- Code for running BinderFlow☆66Jun 22, 2026Updated 2 months ago
- A bare-metal Python library for building and manipulating the molecular structures of proteins, nucleic acids, and small organic molecule…☆20Updated this week
- Metadiffusion implemented in Boltz-2☆24Feb 23, 2026Updated 6 months ago
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆87Jul 23, 2026Updated last month
- A comprehensive repository of scripts, software, and tutorials for molecular evolution, computational protein design, and structural bioi…☆33Jul 26, 2026Updated last month