biopragmatics / bioregistry
๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.
โ120Updated this week
Related projects โ
Alternatives and complementary repositories for bioregistry
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ50Updated 2 weeks ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated 8 months ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.โ76Updated 3 weeks ago
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ61Updated this week
- source files for OBA (Ontology of Biological Attributes)โ27Updated last week
- Github repo for the Experimental Factor Ontology (EFO)โ57Updated this week
- Version 4 of the EMBL-EBI Ontology Lookup Service (OLS)โ47Updated this week
- An ontology of cell typesโ146Updated this week
- Ontology Access Kit: A python library and command line application for working with ontologiesโ125Updated 3 weeks ago
- OBO Organized Knowledge: Training materials for becoming an OBO engineerโ95Updated this week
- A stitching platform for InXightโ16Updated 3 weeks ago
- Schema and generated objects for biolink data model and upper ontologyโ177Updated last week
- โ11Updated this week
- โ23Updated 3 years ago
- PATO - the Phenotype And Trait Ontologyโ58Updated last week
- A system for managing OBO PURLsโ77Updated this week
- Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on โsmallโ chemical compoโฆโ44Updated 2 years ago
- National Microbiome Data Collaborative (NMDC) unified data modelโ27Updated this week
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ39Updated last week
- An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontologyโ134Updated this week
- Medical action ontologyโ52Updated 2 months ago
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated 4 months ago
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cโฆโ48Updated 4 months ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.โ13Updated last year
- The Ontology for Biomedical Investigationsโ75Updated this week
- Build for NCBITaxonโ27Updated this week
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.โ13Updated 7 months ago
- API for linked biological knowledgeโ64Updated 2 years ago
- Data transformation framework for LinkML data modelsโ48Updated this week
- Python toolkit for SSSOM mapping formatโ49Updated this week