๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.
โ140Mar 7, 2026Updated this week
Alternatives and similar repositories for bioregistry
Users that are interested in bioregistry are comparing it to the libraries listed below
Sorting:
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ61Mar 2, 2026Updated last week
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ75Feb 26, 2026Updated last week
- ๐ธ Idiomatic conversion between URIs and compact URIs (CURIEs) in Pythonโ25Jan 14, 2026Updated last month
- Summary Dashboard for Open Biological and Biomedical Ontologiesโ24Feb 28, 2026Updated last week
- โ15Updated this week
- Registry of schemas that use LinkMLโ15Mar 2, 2026Updated last week
- Python toolkit for SSSOM mapping formatโ60Feb 20, 2026Updated 2 weeks ago
- Ontology Access Kit: A python library and command line application for working with ontologiesโ159Feb 20, 2026Updated 2 weeks ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Mar 19, 2024Updated last year
- ๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.โ44Jan 8, 2026Updated 2 months ago
- Schema and generated objects for biolink data model and upper ontologyโ224Feb 25, 2026Updated last week
- Python parser for UCUM (Unified Code for Units of Measure) incl. converter to pint unitsโ14Mar 1, 2026Updated last week
- RO is an ontology of relations for use with biological ontologiesโ110Feb 3, 2026Updated last month
- Simple Standard for Sharing Ontology Mappingsโ186Feb 26, 2026Updated last week
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ46Jan 26, 2026Updated last month
- Mondo Disease Ontologyโ291Feb 28, 2026Updated last week
- Semantic prefix map registryโ13Feb 20, 2026Updated 2 weeks ago
- KGX is a Python library for exchanging Knowledge Graphsโ139Feb 5, 2026Updated last month
- Ten quick tips to finish that manuscript that's 90% complete.โ13Mar 30, 2022Updated 3 years ago
- ๐ช What's the latest version for each database?โ28Updated this week
- Metadata and website for the Open Bio Ontologies Foundry Ontology Registryโ202Updated this week
- PyBioPAX: A python implementation of the BioPAX object modelโ27May 10, 2024Updated last year
- ๐ Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.โ40Sep 29, 2025Updated 5 months ago
- Basic and Advanced OBO Graphs: specification and reference implementationโ70Mar 1, 2026Updated last week
- Bayesian OWL ontology mergingโ34Jun 4, 2025Updated 9 months ago
- source files for OBA (Ontology of Biological Attributes)โ28Jan 21, 2026Updated last month
- Customizable translation of OBO graphs to dot for visualization using graphviz and other toolsโ26Feb 21, 2025Updated last year
- OBO Organized Knowledge: Training materials for becoming an OBO engineerโ117Feb 13, 2026Updated 3 weeks ago
- The EMBL-EBI Ontology Lookup Service (OLS)โ83Updated this week
- python library for working with ontologies and ontology associationsโ133Feb 11, 2025Updated last year
- Tools for working with KGCLโ19Nov 19, 2024Updated last year
- The Ontology for Biomedical Investigationsโ100Updated this week
- An ontology of cell typesโ190Mar 2, 2026Updated last week
- A knowledge extraction tool that uses a large language model to extract semantic information from textโ29Jan 3, 2023Updated 3 years ago
- Draft cell type definitions from data - candidates for inclusion in CLโ12Jul 8, 2025Updated 8 months ago
- A crate for working with genomics chain files.โ12Aug 6, 2025Updated 7 months ago
- Source ontology files for the Gene Ontologyโ240Updated this week
- Feature Annotation Location Description Ontologyโ34Jan 21, 2020Updated 6 years ago
- Schema for chemistry ontology classesโ20Feb 22, 2026Updated 2 weeks ago