Alternatives and similar repositories for bioregistry

Users that are interested in bioregistry are comparing it to the libraries listed below

• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆57Updated 2 weeks ago
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆73Updated this week
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆60Updated last week
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆66Updated 3 years ago
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆147Updated 7 months ago
• biolink / ontobio
  python library for working with ontologies and ontology associations
  ☆130Updated 8 months ago
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated 6 months ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 2 years ago
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated 3 months ago
• monarch-initiative / embiggen
  🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.
  ☆42Updated last year
• microbiomedata / nmdc-schema
  National Microbiome Data Collaborative (NMDC) unified data model
  ☆44Updated last week
• biolink / biolink-model
  Schema and generated objects for biolink data model and upper ontology
  ☆208Updated last week
• evidenceontology / evidenceontology
  Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to c…
  ☆50Updated 4 months ago
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated 3 months ago
• EBISPOT / ols4
  The EMBL-EBI Ontology Lookup Service (OLS)
  ☆73Updated this week
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated last week
• mapping-commons / mh_mapping_initiative
  Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
  ☆13Updated 2 months ago
• gyorilab / pybiopax
  PyBioPAX: A python implementation of the BioPAX object model
  ☆24Updated last year
• OBOFoundry / purl.obolibrary.org
  A system for managing OBO PURLs
  ☆86Updated last week
• obophenotype / cell-ontology
  An ontology of cell types
  ☆182Updated this week
• geneontology / go-site
  A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
  ☆47Updated last week
• biolink / biolink-model-toolkit
  A collection of useful python functions for looking up information and working with the Biolink Model
  ☆24Updated 2 weeks ago
• elixir-europe / biohackathon-projects-2023
  Project code for BioHackathon Europe 2023.
  ☆18Updated last year
• fastobo / fastobo-py
  Faultless AST for Open Biomedical Ontologies in Python.
  ☆30Updated 5 months ago
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆41Updated last week
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆19Updated 5 months ago
• CLO-ontology / CLO
  Communitiy-based Cell Line Ontology
  ☆18Updated last year
• Knowledge-Graph-Hub / kg-microbe
  ☆20Updated this week