biopragmatics / bioregistryLinks
๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.
โ138Updated this week
Alternatives and similar repositories for bioregistry
Users that are interested in bioregistry are comparing it to the libraries listed below
Sorting:
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ57Updated this week
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ74Updated this week
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.โ12Updated last week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.โ82Updated 3 weeks ago
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cโฆโ51Updated 6 months ago
- Github repo for the Experimental Factor Ontology (EFO)โ62Updated last week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated last year
- Data Ingestion Pipeline for Monarchโ57Updated 3 years ago
- API for linked biological knowledgeโ66Updated 3 years ago
- python library for working with ontologies and ontology associationsโ133Updated 10 months ago
- โ24Updated 5 years ago
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ45Updated last week
- The EMBL-EBI Ontology Lookup Service (OLS)โ75Updated this week
- An app and library for building, conversion, and validation of GA4GH Phenopackets.โ16Updated 5 months ago
- EDAM is an ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises conceptโฆโ133Updated last month
- A stitching platform for InXightโ15Updated 8 months ago
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated 5 months ago
- National Microbiome Data Collaborative (NMDC) unified data modelโ44Updated last week
- Schema and generated objects for biolink data model and upper ontologyโ218Updated this week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ42Updated this week
- OBO-formatted ontologies โ networkx (Python 3)โ150Updated 8 months ago
- PyBioPAX: A python implementation of the BioPAX object modelโ25Updated last year
- A collection of metadata, tools, and files associated with the Gene Ontology public web presence.โ49Updated last week
- A system for managing OBO PURLsโ86Updated last week
- A tutorial on using Open Biological and Biomedical Ontologies (OBO)โ62Updated 6 years ago
- ๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.โ42Updated 2 years ago
- โ21Updated last week
- The Ontology for Biomedical Investigationsโ97Updated last week
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.โ26Updated 3 months ago
- An ontology of cell typesโ184Updated last week