Alternatives and similar repositories for bioregistry

Users that are interested in bioregistry are comparing it to the libraries listed below

• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆56Updated 2 weeks ago
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆71Updated last week
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆65Updated 3 years ago
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated 4 months ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆58Updated this week
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆79Updated last week
• OntoGene / OGER
  ☆24Updated 4 years ago
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• biolink / ontobio
  python library for working with ontologies and ontology associations
  ☆128Updated 5 months ago
• biolink / biolink-model
  Schema and generated objects for biolink data model and upper ontology
  ☆201Updated this week
• evidenceontology / evidenceontology
  Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to c…
  ☆50Updated last month
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated last month
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆38Updated this week
• microbiomedata / nmdc-schema
  National Microbiome Data Collaborative (NMDC) unified data model
  ☆43Updated this week
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 2 years ago
• EBISPOT / ols4
  The EMBL-EBI Ontology Lookup Service (OLS)
  ☆67Updated last week
• OBOFoundry / COB
  An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
  ☆44Updated last month
• monarch-initiative / embiggen
  🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.
  ☆42Updated last year
• elixir-europe / biohackathon-projects-2023
  Project code for BioHackathon Europe 2023.
  ☆18Updated 11 months ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• mapping-commons / mh_mapping_initiative
  Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
  ☆13Updated last week
• OBOFoundry / purl.obolibrary.org
  A system for managing OBO PURLs
  ☆84Updated last week
• jamesaoverton / obo-tutorial
  A tutorial on using Open Biological and Biomedical Ontologies (OBO)
  ☆59Updated 6 years ago
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated last month
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆142Updated 4 months ago
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆19Updated 3 months ago
• edamontology / edamontology
  EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises c…
  ☆124Updated 3 months ago
• obophenotype / cell-ontology
  An ontology of cell types
  ☆180Updated this week
• CLO-ontology / CLO
  Communitiy-based Cell Line Ontology
  ☆18Updated last year
• fastobo / fastobo-py
  Faultless AST for Open Biomedical Ontologies in Python.
  ☆30Updated 2 months ago