biopragmatics / bioregistryLinks
๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.
โ137Updated this week
Alternatives and similar repositories for bioregistry
Users that are interested in bioregistry are comparing it to the libraries listed below
Sorting:
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ57Updated this week
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ73Updated last week
- Github repo for the Experimental Factor Ontology (EFO)โ61Updated this week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.โ81Updated last month
- API for linked biological knowledgeโ66Updated 3 years ago
- OBO-formatted ontologies โ networkx (Python 3)โ148Updated 7 months ago
- python library for working with ontologies and ontology associationsโ131Updated 9 months ago
- A stitching platform for InXightโ15Updated 7 months ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated last year
- Schema and generated objects for biolink data model and upper ontologyโ210Updated last week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ42Updated last week
- The EMBL-EBI Ontology Lookup Service (OLS)โ73Updated this week
- โ24Updated 4 years ago
- ๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.โ42Updated last year
- An app and library for building, conversion, and validation of GA4GH Phenopackets.โ16Updated 4 months ago
- Data Ingestion Pipeline for Monarchโ57Updated 2 years ago
- A system for managing OBO PURLsโ86Updated 3 weeks ago
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ44Updated 3 weeks ago
- EDAM is an ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises conceptโฆโ131Updated this week
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cโฆโ50Updated 4 months ago
- Project code for BioHackathon Europe 2023.โ18Updated last year
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated 4 months ago
- An ontology of cell typesโ184Updated this week
- PyBioPAX: A python implementation of the BioPAX object modelโ24Updated last year
- ๐ช What's the latest version for each database?โ27Updated last week
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.โ13Updated 3 months ago
- A collection of useful python functions for looking up information and working with the Biolink Modelโ24Updated last week
- National Microbiome Data Collaborative (NMDC) unified data modelโ44Updated last week
- A tutorial on using Open Biological and Biomedical Ontologies (OBO)โ61Updated 6 years ago
- RO is an ontology of relations for use with biological ontologiesโ102Updated last week