biopragmatics / bioregistry
๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.
โ120Updated this week
Alternatives and similar repositories for bioregistry:
Users that are interested in bioregistry are comparing it to the libraries listed below
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ51Updated last week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated 11 months ago
- source files for OBA (Ontology of Biological Attributes)โ27Updated last week
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ62Updated this week
- Version 4 of the EMBL-EBI Ontology Lookup Service (OLS)โ54Updated this week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.โ78Updated last month
- Github repo for the Experimental Factor Ontology (EFO)โ58Updated this week
- An app and library for building, conversion, and validation of GA4GH Phenopackets.โ13Updated last year
- A stitching platform for InXightโ16Updated 3 months ago
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cโฆโ50Updated 7 months ago
- Communitiy-based Cell Line Ontologyโ18Updated 7 months ago
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated last month
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.โ13Updated last month
- An ontology of cell typesโ162Updated this week
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ40Updated this week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ33Updated last week
- โ12Updated last week
- A system for managing OBO PURLsโ79Updated this week
- PATO - the Phenotype And Trait Ontologyโ58Updated 2 weeks ago
- Repository for the GA4GH phenopacket schemaโ84Updated 5 months ago
- Data Ingestion Pipeline for Monarchโ57Updated 2 years ago
- Monarch Initiative website and APIโ20Updated this week
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.โ21Updated last month
- Schema and generated objects for biolink data model and upper ontologyโ184Updated 2 weeks ago
- Build for NCBITaxonโ27Updated 2 months ago
- Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.โ22Updated this week
- python library for working with ontologies and ontology associationsโ124Updated last week
- The Ontology for Biomedical Investigationsโ76Updated this week
- Ontology Access Kit: A python library and command line application for working with ontologiesโ131Updated last week
- Data transformation framework for LinkML data modelsโ48Updated last month