biopragmatics / pyobo
๐ A Python package for using ontologies, terminologies, and biomedical nomenclatures
โ62Updated last week
Alternatives and similar repositories for pyobo:
Users that are interested in pyobo are comparing it to the libraries listed below
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ52Updated last month
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated last year
- KGX is a Python library for exchanging Knowledge Graphsโ119Updated 2 months ago
- ๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.โ42Updated last year
- Ontology cross-reference and mapping serviceโ18Updated 8 months ago
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ121Updated this week
- โ14Updated 2 months ago
- Grounding of biomedical named entities with contextual disambiguationโ43Updated this week
- Github repo for the Experimental Factor Ontology (EFO)โ57Updated last week
- Integrated OBO ontology storeโ44Updated 3 weeks ago
- ๐ช What's the latest version for each database?โ27Updated this week
- python library for working with ontologies and ontology associationsโ128Updated last month
- โ24Updated 4 years ago
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.โ81Updated last year
- NetworkX-based Python library for representing ontologiesโ85Updated last year
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.โ13Updated 2 months ago
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ40Updated last month
- Build PharMeBINet from different sources.โ15Updated 3 weeks ago
- Data ingest application for Monarch Initiative knowledge graph using Kozaโ15Updated this week
- A stitching platform for InXightโ16Updated 5 months ago
- Ontology Access Kit: A python library and command line application for working with ontologiesโ135Updated last week
- The symptom ontology was designed around the guiding concept of a symptom being: โA perceived change in function, sensation or appearanceโฆโ41Updated 10 months ago
- Turning Ontologies Plus Annotation Properties into Vectorsโ35Updated 4 years ago
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cโฆโ50Updated 8 months ago
- Data transformation framework for LinkML data modelsโ50Updated 3 weeks ago
- Schema and generated objects for biolink data model and upper ontologyโ190Updated last week
- An app and library for building, conversion, and validation of GA4GH Phenopackets.โ13Updated last year
- โ128Updated 2 years ago
- First pass at a thin wrapper around the Monarch API and ChatGPT pluginโ13Updated this week
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giโฆโ45Updated 2 years ago