Alternatives and similar repositories for pyobo

Users that are interested in pyobo are comparing it to the libraries listed below

• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆56Updated last week
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆132Updated this week
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• biolink / kgx
  KGX is a Python library for exchanging Knowledge Graphs
  ☆129Updated 2 weeks ago
• related-sciences / nxontology
  NetworkX-based Python library for representing ontologies
  ☆90Updated 2 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆45Updated 2 months ago
• biolink / ontobio
  python library for working with ontologies and ontology associations
  ☆129Updated 5 months ago
• monarch-initiative / embiggen
  🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.
  ☆42Updated last year
• OntoGene / OGER
  ☆24Updated 4 years ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• evidenceontology / evidenceontology
  Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to c…
  ☆50Updated 3 weeks ago
• PROconsortium / PRoteinOntology
  ☆15Updated 3 weeks ago
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆19Updated 2 months ago
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated 3 months ago
• bio-ontology-research-group / machine-learning-with-ontologies
  ☆130Updated 2 years ago
• INCATools / ontology-access-kit
  Ontology Access Kit: A python library and command line application for working with ontologies
  ☆146Updated last month
• INCATools / ubergraph
  Integrated OBO ontology store
  ☆47Updated this week
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆192Updated last year
• mapping-commons / mh_mapping_initiative
  Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
  ☆13Updated last month
• monarch-initiative / monarch-ingest
  Data ingest application for Monarch Initiative knowledge graph using Koza
  ☆17Updated this week
• Knowledge-Graph-Hub / kg-covid-19
  An instance of KG Hub to produce a knowledge graph for COVID-19 response.
  ☆82Updated last year
• biolink / biolink-model
  Schema and generated objects for biolink data model and upper ontology
  ☆199Updated this week
• biolink / biolink-model-toolkit
  A collection of useful python functions for looking up information and working with the Biolink Model
  ☆24Updated 3 weeks ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆58Updated last week
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated last week
• monarch-initiative / MAxO
  Medical action ontology
  ☆59Updated last month
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆79Updated last month
• Knowledge-Graph-Hub / kg-microbe
  ☆19Updated last week
• OBOFoundry / OBO-Dashboard
  Summary Dashboard for Open Biological and Biomedical Ontologies
  ☆23Updated 2 weeks ago
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆36Updated this week