biopragmatics / pyoboLinks
๐ A Python package for using ontologies, terminologies, and biomedical nomenclatures
โ73Updated last week
Alternatives and similar repositories for pyobo
Users that are interested in pyobo are comparing it to the libraries listed below
Sorting:
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ57Updated this week
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ137Updated last week
- python library for working with ontologies and ontology associationsโ131Updated 9 months ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated last year
- KGX is a Python library for exchanging Knowledge Graphsโ134Updated last month
- ๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.โ42Updated last year
- โ24Updated 4 years ago
- NetworkX-based Python library for representing ontologiesโ90Updated 2 years ago
- Ontology cross-reference and mapping serviceโ19Updated 6 months ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Modelsโ195Updated last year
- Grounding of biomedical named entities with contextual disambiguationโ45Updated 3 months ago
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ44Updated 3 weeks ago
- ๐ช What's the latest version for each database?โ27Updated last week
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.โ13Updated 3 months ago
- A collection of useful python functions for looking up information and working with the Biolink Modelโ24Updated last week
- Ontology Access Kit: A python library and command line application for working with ontologiesโ155Updated 5 months ago
- The EMBL-EBI Ontology Lookup Service (OLS)โ73Updated this week
- A stitching platform for InXightโ15Updated 7 months ago
- โ15Updated last week
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cโฆโ50Updated 4 months ago
- Integrated OBO ontology storeโ48Updated last month
- Summary Dashboard for Open Biological and Biomedical Ontologiesโ23Updated last month
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated 4 months ago
- Python toolkit for SSSOM mapping formatโ57Updated last week
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.โ82Updated 2 years ago
- Schema and generated objects for biolink data model and upper ontologyโ210Updated last week
- LLM-driven curation assist toolโ99Updated 3 weeks ago
- ๐ก Unified access to OLS instances like from the EBI and TIBโ13Updated this week
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.โ26Updated last month
- OBO-formatted ontologies โ networkx (Python 3)โ148Updated 7 months ago