๐ A Python package for using ontologies, terminologies, and biomedical nomenclatures
โ76Aug 12, 2026Updated this week
Alternatives and similar repositories for pyobo
Users that are interested in pyobo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Customizable translation of OBO graphs to dot for visualization using graphviz and other toolsโ26Feb 21, 2025Updated last year
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ146Updated this week
- Registry of schemas that use LinkMLโ19Jul 27, 2026Updated 2 weeks ago
- ๐ฃ๏ธ Semantic Mapping Reasoning Assembler (SeMRA): tooling for semantic mappingsโ15Updated this week
- Summary Dashboard for Open Biological and Biomedical Ontologiesโ24Jun 8, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI โข AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Bayesian OWL ontology mergingโ37Jun 4, 2025Updated last year
- โ15Updated this week
- Schema for chemistry ontology classesโ23Jul 18, 2026Updated 3 weeks ago
- Integrated OBO ontology storeโ51Jul 18, 2026Updated 3 weeks ago
- OBO Organized Knowledge: Training materials for becoming an OBO engineerโ122Aug 6, 2026Updated last week
- ๐ถ๏ธ An ecosystem in Python for working with the Biological Expression Language (BEL)โ139Jul 2, 2026Updated last month
- โ10Jul 11, 2026Updated last month
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ50Jul 16, 2026Updated 3 weeks ago
- The Ontology for Modeling and Representation of Social Entitiesโ21Updated this week
- Proton VPN Special Offer - Get 70% off โข AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laeviโฆโ11Jul 25, 2025Updated last year
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ64Updated this week
- PyBioPAX: A python implementation of the BioPAX object modelโ27May 10, 2024Updated 2 years ago
- Python toolkit for SSSOM mapping formatโ63Aug 3, 2026Updated last week
- Fission Yeast Phenotype Ontologyโ16Jul 2, 2026Updated last month
- Faultless AST for Open Biomedical Ontologies in Python.โ33Feb 2, 2026Updated 6 months ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automaticallyโ43Jun 19, 2026Updated last month
- Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formatsโ54Feb 4, 2026Updated 6 months ago
- Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on โsmallโ chemical compoโฆโ51Apr 20, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available โข AdRun AI, ML, and HPC workloads on powerful cloud GPUsโwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Automated assistance for the schema development lifecycleโ65Jul 17, 2026Updated 3 weeks ago
- Ontology Access Kit: A python library and command line application for working with ontologiesโ193Aug 8, 2026Updated last week
- Grounding of biomedical named entities with contextual disambiguationโ54Jun 29, 2026Updated last month
- A system for managing OBO PURLsโ94Aug 7, 2026Updated last week
- ๐ A review of KGEM packages and frameworks at https://pykeen.github.io/kgem-software-review.โ12Jun 24, 2024Updated 2 years ago
- ๐ Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Knowโฆโ36Apr 19, 2022Updated 4 years ago
- Repository for Apollo-SV ontology. Versioning Apollo-SV independently of the software was made easiest by having it as a separate reposiโฆโ10Jul 24, 2026Updated 3 weeks ago
- A knowledge extraction tool that uses a large language model to extract semantic information from textโ30Jan 3, 2023Updated 3 years ago
- Basic and Advanced OBO Graphs: specification and reference implementationโ73Mar 1, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer โข AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ๐ Easily pick a place to store data for your Python code.โ43Updated this week
- OBO Metadata Ontologyโ26Mar 17, 2026Updated 4 months ago
- ๐ช What's the latest version for each database?โ31Updated this week
- Standardized identifiers and OWL classes for chromosomes and chromosomal parts across speciesโ15May 19, 2026Updated 2 months ago
- RO is an ontology of relations for use with biological ontologiesโ111Updated this week
- Neuro Behaviour Ontology: an ontology for human and animal behaviour processes and behaviour phenotypesโ27Jan 14, 2026Updated 7 months ago
- SQL and SQLite builds of OWL ontologiesโ68Updated this week