biopragmatics / pyobo
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
☆65Updated this week
Alternatives and similar repositories for pyobo:
Users that are interested in pyobo are comparing it to the libraries listed below
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆52Updated 3 weeks ago
- NetworkX-based Python library for representing ontologies☆86Updated last year
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆43Updated 3 weeks ago
- 🪝 What's the latest version for each database?☆27Updated this week
- python library for working with ontologies and ontology associations☆128Updated 2 months ago
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆129Updated this week
- A collection of useful python functions for looking up information and working with the Biolink Model☆23Updated last month
- Github repo for the Experimental Factor Ontology (EFO)☆57Updated this week
- Ontology cross-reference and mapping service☆18Updated 9 months ago
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆81Updated last year
- ☆24Updated 4 years ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆33Updated this week
- A stitching platform for InXight☆16Updated 2 weeks ago
- KGX is a Python library for exchanging Knowledge Graphs☆123Updated 3 months ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆13Updated last year
- 🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.☆42Updated last year
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆16Updated 3 weeks ago
- Build PharMeBINet from different sources.☆16Updated 2 weeks ago
- Integrated OBO ontology store☆44Updated last month
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to c…☆50Updated 8 months ago
- RO is an ontology of relations for use with biological ontologies☆95Updated last week
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.☆13Updated 3 months ago
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆13Updated 3 weeks ago
- ☆128Updated 2 years ago
- Monarch Initiative website and API☆23Updated this week
- Communitiy-based Cell Line Ontology☆18Updated 9 months ago
- TypeDB Bio: Biomedical Knowledge Graph☆86Updated 9 months ago
- mOWL: Machine Learning library with Ontologies☆65Updated 2 months ago