๐ A Python package for using ontologies, terminologies, and biomedical nomenclatures
โ76May 21, 2026Updated this week
Alternatives and similar repositories for pyobo
Users that are interested in pyobo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Customizable translation of OBO graphs to dot for visualization using graphviz and other toolsโ26Feb 21, 2025Updated last year
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ143Updated this week
- Registry of schemas that use LinkMLโ16May 18, 2026Updated last week
- Summary Dashboard for Open Biological and Biomedical Ontologiesโ24Apr 20, 2026Updated last month
- Bayesian OWL ontology mergingโ36Jun 4, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer โข AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Schema for chemistry ontology classesโ23Updated this week
- Integrated OBO ontology storeโ49Feb 13, 2026Updated 3 months ago
- OBO Organized Knowledge: Training materials for becoming an OBO engineerโ120Apr 28, 2026Updated 3 weeks ago
- โ15May 20, 2026Updated last week
- ๐ถ๏ธ An ecosystem in Python for working with the Biological Expression Language (BEL)โ138Jun 26, 2024Updated last year
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ49May 4, 2026Updated 3 weeks ago
- XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laeviโฆโ11Jul 25, 2025Updated 10 months ago
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ62May 6, 2026Updated 2 weeks ago
- PyBioPAX: A python implementation of the BioPAX object modelโ27May 10, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform โข AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fission Yeast Phenotype Ontologyโ16Updated this week
- The Ontology for Modeling and Representation of Social Entitiesโ21May 16, 2026Updated last week
- Faultless AST for Open Biomedical Ontologies in Python.โ32Feb 2, 2026Updated 3 months ago
- Python toolkit for SSSOM mapping formatโ62May 13, 2026Updated last week
- Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formatsโ52Feb 4, 2026Updated 3 months ago
- โ10May 9, 2026Updated 2 weeks ago
- Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on โsmallโ chemical compoโฆโ51Apr 20, 2022Updated 4 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automaticallyโ41Apr 2, 2024Updated 2 years ago
- Automated assistance for the schema development lifecycleโ59May 18, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform โข AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Ontology Access Kit: A python library and command line application for working with ontologiesโ170May 12, 2026Updated 2 weeks ago
- Grounding of biomedical named entities with contextual disambiguationโ52Mar 30, 2026Updated last month
- A system for managing OBO PURLsโ91May 19, 2026Updated last week
- ๐ Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Knowโฆโ36Apr 19, 2022Updated 4 years ago
- ๐ธ Idiomatic conversion between URIs and compact URIs (CURIEs) in Pythonโ27May 7, 2026Updated 2 weeks ago
- ๐ A review of KGEM packages and frameworks at https://pykeen.github.io/kgem-software-review.โ12Jun 24, 2024Updated last year
- A knowledge extraction tool that uses a large language model to extract semantic information from textโ30Jan 3, 2023Updated 3 years ago
- Standardized identifiers and OWL classes for chromosomes and chromosomal parts across speciesโ16May 19, 2026Updated last week
- ๐ Easily pick a place to store data for your Python code.โ42Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer โข AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ๐ช What's the latest version for each database?โ29May 20, 2026Updated last week
- Basic and Advanced OBO Graphs: specification and reference implementationโ71Mar 1, 2026Updated 2 months ago
- RO is an ontology of relations for use with biological ontologiesโ112Feb 3, 2026Updated 3 months ago
- Python parser for UCUM (Unified Code for Units of Measure) incl. converter to pint unitsโ14May 1, 2026Updated 3 weeks ago
- Build for NCBITaxonโ31May 13, 2026Updated last week
- ๐๏ธโ๐จ๏ธ Scientists often do the same bad stuff. Automate giving deterministic feedback during peer review with determinstic (LLM-free)โ30May 9, 2025Updated last year
- Repository for Apollo-SV ontology. Versioning Apollo-SV independently of the software was made easiest by having it as a separate reposiโฆโ11Apr 9, 2026Updated last month