kylessmith / SomVarIUS
Somatic variant identification from unpaired samples
☆15Updated 8 years ago
Alternatives and similar repositories for SomVarIUS
Users that are interested in SomVarIUS are comparing it to the libraries listed below
Sorting:
- ☆46Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- ☆39Updated last year
- ☆41Updated last year
- ☆53Updated 2 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- QDNAseq package for Bioconductor☆50Updated 9 months ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆50Updated 2 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- ⛏ HLA predictions from NGS shotgun data☆53Updated 3 weeks ago
- CN-Learn☆29Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated last week
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated 2 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 10 months ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 6 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 8 months ago
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- Benchmarking of CNV calling tools☆18Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Burden testing against public controls☆50Updated last year