kylessmith / SomVarIUSLinks
Somatic variant identification from unpaired samples
☆15Updated 8 years ago
Alternatives and similar repositories for SomVarIUS
Users that are interested in SomVarIUS are comparing it to the libraries listed below
Sorting:
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- ☆41Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- ☆53Updated 2 years ago
- ☆46Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Updated 8 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- ☆39Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- QDNAseq package for Bioconductor☆50Updated 11 months ago
- Burden testing against public controls☆50Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 10 months ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- Battenberg R package for subclonal copynumber estimation☆88Updated last week
- Tumor Mutational Burden☆61Updated 10 months ago
- Relevant papers for CNV and SV approaches☆94Updated 8 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Updated 11 months ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Updated 7 years ago
- ⛏ HLA predictions from NGS shotgun data☆53Updated last month
- Characterization of Germline variants☆98Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆85Updated 2 weeks ago