Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
☆85Feb 6, 2024Updated 2 years ago
Alternatives and similar repositories for HistoBistro
Users that are interested in HistoBistro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.☆23Jan 29, 2025Updated last year
- ☆16Feb 5, 2026Updated last month
- Tools to build deep learning pipelines.☆114Nov 12, 2024Updated last year
- A vision language model for gigapixel whole slide images in histopathology☆95Sep 4, 2025Updated 6 months ago
- Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch☆24Oct 13, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Official implementation of CytoSAE: Interpretable Cell Embeddings for Hematology☆23Jul 17, 2025Updated 8 months ago
- ☆352Mar 29, 2025Updated last year
- DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs☆65Nov 29, 2024Updated last year
- HVTSurv: Hierarchical Vision Transformer for Patient-level Survival Prediction from Whole Slide Image-AAAI 2023☆34Jul 2, 2023Updated 2 years ago
- ☆94Mar 12, 2026Updated 2 weeks ago
- ☆104Nov 16, 2023Updated 2 years ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆54Feb 2, 2024Updated 2 years ago
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆44Dec 16, 2024Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆193Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Histopathology Feature Extractors (2024)☆14Jun 14, 2024Updated last year
- membrane segmentation in 3D for cryo-ET☆88Feb 27, 2026Updated last month
- source code of Inter-MIL: self-interactive multi-instance learning☆16Aug 1, 2023Updated 2 years ago
- Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021☆240Mar 11, 2022Updated 4 years ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆165Jan 29, 2024Updated 2 years ago
- Histopathology Image Analysis☆94Jul 6, 2023Updated 2 years ago
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago
- Solid Tumor Associative Modeling in Pathology☆115Updated this week
- machine-readable information for the TCGA dataset, mirrored from other sources☆21Jun 14, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- S5CL: Unifying Fully-Supervised, Self-Supervised, and Semi-Supervised Learning Through Hierarchical Contrastive Learning☆16Jan 29, 2023Updated 3 years ago
- TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification☆472May 3, 2024Updated last year
- Multi-Scale Representation Attention based Deep Multiple Instance Learning for Gigapixel Whole Slide Image Analysis☆25Aug 26, 2023Updated 2 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆85Jul 11, 2024Updated last year
- Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images☆20Jul 8, 2024Updated last year
- ☆24Oct 9, 2023Updated 2 years ago
- SEGmentation using Graphs with Inexact aNd Incomplete labels☆21Mar 25, 2022Updated 4 years ago
- [ICCV'23] ConSlide: Asynchronous Hierarchical Interaction Transformer with Breakup-Reorganize Rehearsal for Continual Whole Slide Image A…☆15Oct 6, 2023Updated 2 years ago
- Improving Representation Learning for Histopathologic Images with Cluster Constraints☆17Jan 20, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆143Jun 9, 2022Updated 3 years ago
- ☆11Dec 30, 2024Updated last year
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆146Feb 22, 2025Updated last year
- [MICCAI 2024] Official Code for "MambaMIL: Enhancing Long Sequence Modeling with Sequence Reordering in Computational Pathology"☆112Apr 22, 2025Updated 11 months ago
- Efficient subtyping of ovarian cancer histopathology whole slide images using active sampling in multiple instance learning☆11Mar 19, 2024Updated 2 years ago
- ☆57Jan 18, 2022Updated 4 years ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆113Oct 15, 2024Updated last year