georg-wolflein / pathology-foundation-models
List of pathology feature extractors and foundation models
☆111Updated last month
Alternatives and similar repositories for pathology-foundation-models:
Users that are interested in pathology-foundation-models are comparing it to the libraries listed below
- Toolkit for large-scale whole-slide image processing.☆145Updated this week
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆68Updated last year
- Solid Tumor Associative Modeling in Pathology☆66Updated this week
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆121Updated last month
- Tools to build deep learning pipelines.☆96Updated 4 months ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆58Updated last month
- Histopathology Image Analysis☆93Updated last year
- Stain normalization tools for histological analysis and computational pathology☆135Updated 2 months ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆94Updated 5 months ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆79Updated last month
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆202Updated 2 years ago
- Virtual Alignment of pathoLogy Image Series☆149Updated 3 months ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆148Updated last year
- A pan-cancer platform for mutation prediction from routine histology☆68Updated 3 years ago
- Encoder-Decoder Cell and Nuclei segmentation models☆89Updated last month
- Pipeline for computational pathology☆34Updated last year
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆38Updated 3 months ago
- Histopathology Slides Preprocessing Pipeline☆36Updated last week
- A pipeline to segment tissue from the background in histological images☆68Updated last year
- First commit☆60Updated 2 years ago
- Python 3 library for the augmentation & normalization of H&E images☆52Updated 2 years ago
- Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images☆20Updated 8 months ago
- GrandQC tool for tissue detection and quality control in pathology☆33Updated 3 weeks ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆98Updated 4 months ago
- Standardized benchmark for computational pathology foundation models.☆58Updated 3 weeks ago
- ☆13Updated 4 months ago
- Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024☆129Updated 4 months ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆35Updated last month
- End-to-end pipeline to go from raw H&E slides to normalised extracted features for training☆26Updated last year
- ☆30Updated last week