georg-wolflein / pathology-foundation-modelsLinks
List of pathology feature extractors and foundation models
☆154Updated 4 months ago
Alternatives and similar repositories for pathology-foundation-models
Users that are interested in pathology-foundation-models are comparing it to the libraries listed below
Sorting:
- Standardized benchmark for computational pathology foundation models.☆107Updated 2 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆83Updated last year
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆141Updated 8 months ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆158Updated last year
- Multimodal prototyping for cancer survival prediction - ICML 2024☆96Updated 8 months ago
- Awesome List of Digital and Computational Pathology Resources☆83Updated 9 months ago
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆99Updated 2 months ago
- Stain normalization tools for histological analysis and computational pathology☆155Updated 9 months ago
- Tools to build deep learning pipelines.☆109Updated 11 months ago
- Solid Tumor Associative Modeling in Pathology☆92Updated this week
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆108Updated last year
- GrandQC tool for tissue detection and quality control in pathology☆70Updated 7 months ago
- Toolkit for large-scale whole-slide image processing.☆393Updated last month
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆227Updated 2 years ago
- ☆27Updated 11 months ago
- Virtual Alignment of pathoLogy Image Series☆185Updated 4 months ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆261Updated last year
- First commit☆63Updated 3 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated this week
- Repository for the Giga-SSL paper☆25Updated last year
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆56Updated 10 months ago
- Interpretable Gland-Graph Networks☆22Updated last year
- Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images☆20Updated last year
- ☆56Updated 2 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆72Updated 8 months ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆36Updated 8 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated this week
- Histopathology Slides Preprocessing Pipeline☆42Updated 7 months ago
- Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024☆152Updated 11 months ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆25Updated 2 months ago