KatherLab / marugotoLinks
Tools to build deep learning pipelines.
☆105Updated 9 months ago
Alternatives and similar repositories for marugoto
Users that are interested in marugoto are comparing it to the libraries listed below
Sorting:
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆81Updated last year
- First commit☆62Updated 3 years ago
- Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images☆20Updated last year
- Solid Tumor Associative Modeling in Pathology☆84Updated last week
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆31Updated last year
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆224Updated 2 years ago
- GrandQC tool for tissue detection and quality control in pathology☆61Updated 5 months ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆24Updated 2 months ago
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆38Updated 3 months ago
- Virtual Alignment of pathoLogy Image Series☆171Updated 2 months ago
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆42Updated 8 months ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆48Updated last year
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆70Updated 6 months ago
- Awesome List of Digital and Computational Pathology Resources☆70Updated 7 months ago
- List of pathology feature extractors and foundation models☆147Updated 2 months ago
- ☆23Updated 8 months ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆91Updated 6 months ago
- ☆54Updated 2 years ago
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆81Updated 3 weeks ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆105Updated 9 months ago
- Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning☆44Updated 4 years ago
- ☆55Updated 3 years ago
- ☆20Updated 2 years ago
- ☆34Updated 5 months ago
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆138Updated 6 months ago
- Toolkit for large-scale whole-slide image processing.☆334Updated last week
- ☆102Updated last year
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆174Updated 3 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 7 months ago
- Standardized benchmark for computational pathology foundation models.☆96Updated 2 weeks ago