Tools to build deep learning pipelines.
☆115Nov 12, 2024Updated last year
Alternatives and similar repositories for marugoto
Users that are interested in marugoto are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Solid Tumor Associative Modeling in Pathology☆131Aug 21, 2026Updated last month
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆90Feb 6, 2024Updated 2 years ago
- ☆50May 9, 2022Updated 4 years ago
- ☆106Nov 16, 2023Updated 2 years ago
- End-to-end pipeline to go from raw H&E slides to normalised extracted features for training☆28Mar 20, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆47Apr 12, 2023Updated 3 years ago
- Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch☆24Oct 13, 2023Updated 2 years ago
- ☆62May 29, 2023Updated 3 years ago
- machine-readable information for the TCGA dataset, mirrored from other sources☆23Jun 14, 2022Updated 4 years ago
- MOMA☆52Mar 14, 2024Updated 2 years ago
- Histopathology Image Analysis☆95Jul 6, 2023Updated 3 years ago
- source code of Inter-MIL: self-interactive multi-instance learning☆17Aug 1, 2023Updated 3 years ago
- Scripts for data processing☆51Jun 6, 2024Updated 2 years ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆252Feb 7, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Unsupervised Semantic Segmentation for Pathology☆17Nov 21, 2024Updated last year
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆45Dec 16, 2024Updated last year
- Welcome to the Medical LLM repository, your premier gateway to a structured and meticulously designed pipeline exclusively crafted for la…☆19Apr 10, 2024Updated 2 years ago
- ☆34Jan 18, 2023Updated 3 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆26Mar 16, 2025Updated last year
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆556Updated this week
- This repository contains the implementation of TILAb-score as described in the original paper.☆19Oct 3, 2019Updated 7 years ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆172May 14, 2024Updated 2 years ago
- ☆59Jan 18, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multimodal prototyping for cancer survival prediction - ICML 2024☆123Feb 22, 2025Updated last year
- Open source tools for computational pathology - Nature BME☆1,747Apr 14, 2025Updated last year
- ☆363Mar 29, 2025Updated last year
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆169Jan 29, 2024Updated 2 years ago
- H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net☆10Jul 30, 2024Updated 2 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆274Dec 23, 2023Updated 2 years ago
- ☆17Feb 18, 2025Updated last year
- Stain normalization tools for histological analysis and computational pathology☆191Nov 13, 2025Updated 10 months ago
- Inference code for HoVer-NeXt☆53Aug 26, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Feb 8, 2022Updated 4 years ago
- First commit☆68Jul 5, 2022Updated 4 years ago
- Histopathology Feature Extractors (2024)☆15Jun 14, 2024Updated 2 years ago
- Toolkit for large-scale whole-slide image processing.☆641Sep 15, 2026Updated 3 weeks ago
- GrandQC tool for tissue detection and quality control in pathology☆125Dec 27, 2025Updated 9 months ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆327Aug 22, 2022Updated 4 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆87Jul 11, 2024Updated 2 years ago