KatherLab / marugotoLinks
Tools to build deep learning pipelines.
☆110Updated last year
Alternatives and similar repositories for marugoto
Users that are interested in marugoto are comparing it to the libraries listed below
Sorting:
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆84Updated last year
- First commit☆63Updated 3 years ago
- Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images☆20Updated last year
- GrandQC tool for tissue detection and quality control in pathology☆75Updated 8 months ago
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆45Updated 10 months ago
- Solid Tumor Associative Modeling in Pathology☆98Updated last week
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆51Updated last year
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆32Updated last year
- Multimodal prototyping for cancer survival prediction - ICML 2024☆101Updated 8 months ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆228Updated 2 years ago
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆43Updated 6 months ago
- ☆57Updated 2 years ago
- ☆57Updated 3 years ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆25Updated 2 months ago
- Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning☆45Updated 4 years ago
- List of pathology feature extractors and foundation models☆155Updated 5 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated last week
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆74Updated 9 months ago
- Standardized benchmark for computational pathology foundation models.☆111Updated last week
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆143Updated 8 months ago
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆106Updated 3 months ago
- ☆27Updated 11 months ago
- ☆37Updated 7 months ago
- ☆101Updated 2 years ago
- Virtual Alignment of pathoLogy Image Series☆188Updated 4 months ago
- Awesome List of Digital and Computational Pathology Resources☆88Updated 10 months ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆157Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆56Updated 11 months ago
- ☆19Updated 2 years ago