koszullab / pareidolia
Multi-sample change detection in Hi-C patterns
☆9Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for pareidolia
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆27Updated 3 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆39Updated last year
- Mapping Alternative Splicing Events to pRoteins☆18Updated 2 years ago
- ☆29Updated 4 months ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆16Updated 9 years ago
- Streamlining SLAM-seq analysis with ultra-high sensitivity☆39Updated 6 months ago
- R package to evaluate the reproducibility of Hi-C data☆25Updated last year
- pipeline for the analysis of small RNA data☆14Updated 5 years ago
- RNA-Seq Mutation Detection☆28Updated 3 years ago
- Statistically Significant loops from HiChIP data☆39Updated 7 months ago
- An HLA star-calling tool for PacBio HiFi data types☆20Updated 7 months ago
- small RNA analysis from NGS data☆37Updated 2 months ago
- Full-length transcriptome splicing and mutation analysis☆73Updated 4 months ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆25Updated 4 years ago
- GENome Organisation Visual Analytics☆13Updated 2 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated last year
- ☆16Updated 4 years ago
- Single-cell Hi-C data analysis toolbox☆24Updated 3 years ago
- PSI-Sigma☆35Updated last year
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆13Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated last year
- Long read to rMATS☆31Updated last year
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- a complete reference book for clusterProfiler and its sub-packages☆13Updated 3 years ago
- ⛓ Correct misassemblies using linked AND long reads☆55Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 7 months ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆62Updated last year
- QC report generator for Hi-C pairs file☆10Updated 4 years ago