Alternatives and similar repositories for pareidolia:

Users that are interested in pareidolia are comparing it to the libraries listed below

• ben-laufer / DMRichR
  A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…
  ☆40Updated last year
• shenlab-sinai / ngsplotdb
  Genome databases generation pipeline for ngs.plot and region_analysis.
  ☆16Updated 9 years ago
• DiogoVeiga / maser
  Mapping Alternative Splicing Events to pRoteins
  ☆18Updated 2 years ago
• TheJacksonLaboratory / ChIA-PIPE
  ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization
  ☆27Updated 3 years ago
• OscarGVelasco / LotOfCells
  R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data
  ☆21Updated 5 months ago
• lpantano / seqbuster
  pipeline for the analysis of small RNA data
  ☆14Updated 5 years ago
• jianhong / ChIPpeakAnno
  ☆12Updated 2 weeks ago
• LuyiTian / FLAMES
  Full-length transcriptome splicing and mutation analysis
  ☆76Updated 6 months ago
• koszullab / chromosight
  Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
  ☆63Updated 2 years ago
• parklab / MosaicForecast
  A mosaic detecting software based on phasing and random forest
  ☆62Updated last year
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆47Updated last week
• ShixiangWang / DoAbsolute
  Automate Absolute Copy Number Calling using 'ABSOLUTE' package
  ☆38Updated last year
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆56Updated last week
• YeoLab / MINES
  (m)6A (I)dentification Using (N)anopor(E) (S)equencing
  ☆18Updated 4 years ago
• cancerit / ClusterSV
  SV clustering
  ☆28Updated 3 years ago
• JRowleyLab / HiCrayon
  Web-Application for the cross-visualization of HiC and ChIP-seq data.
  ☆15Updated 2 months ago
• nf-core / clipseq
  CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
  ☆21Updated 8 months ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆39Updated 9 months ago
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆65Updated 4 years ago
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆23Updated 2 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆30Updated last year
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆60Updated 3 months ago
• joachimwolff / scHiCExplorer
  Single-cell Hi-C data analysis toolbox
  ☆24Updated 3 years ago
• vierstralab / footprint-tools
  A toolset to analyze genomic footprinting data
  ☆19Updated 7 months ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆50Updated 3 weeks ago
• TaoYang-dev / hicrep
  R package to evaluate the reproducibility of Hi-C data
  ☆26Updated last year
• JunyueC / sci-fate_analysis
  Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)
  ☆24Updated 4 years ago
• mritchielab / FLAMES
  A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
  ☆26Updated last week
• anlin00007 / OnTAD
  An Optimized Nested TAD caller for Hi-C data
  ☆20Updated 3 years ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆22Updated this week