Alternatives and similar repositories for pareidolia

Users that are interested in pareidolia are comparing it to the libraries listed below

• parklab / MosaicForecast
  A mosaic detecting software based on phasing and random forest
  ☆64Updated last year
• koszullab / chromosight
  Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
  ☆68Updated 2 years ago
• lpantano / seqbuster
  pipeline for the analysis of small RNA data
  ☆14Updated 6 years ago
• ay-lab / selfish
  SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.
  ☆17Updated 2 years ago
• davidliwei / rnaseqmut
  RNA-Seq Mutation Detection
  ☆28Updated 4 years ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆44Updated 3 years ago
• vaquerizaslab / tadtool
  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
  ☆47Updated 2 years ago
• XiaoTaoWang / HiCPeaks
  A Python implementation for BH-FDR and HiCCUPS
  ☆50Updated 3 months ago
• agalitsyna / fontanka
  Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …
  ☆12Updated 2 years ago
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆50Updated 6 years ago
• TaoYang-dev / hicrep
  R package to evaluate the reproducibility of Hi-C data
  ☆26Updated 2 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 3 months ago
• TheJacksonLaboratory / ChIA-PIPE
  ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization
  ☆28Updated 3 years ago
• agalitsyna / avTAD
  Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).
  ☆10Updated 4 years ago
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆39Updated 4 years ago
• dhkron / PSYCHIC
  Code for finding putative enhancers using Hi-C data
  ☆27Updated 7 years ago
• wososa / PSI-Sigma
  PSI-Sigma
  ☆38Updated last year
• XiaoTaoWang / domaincaller
  A Python implementation of the original DI domain caller
  ☆12Updated 5 years ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆44Updated last month
• JRowleyLab / HiCrayon
  Web-Application for the cross-visualization of HiC and ChIP-seq data.
  ☆18Updated 9 months ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated last year
• dekkerlab / crane-nature-2015
  code associated with crane-nature-2015, 10.1038/nature14450
  ☆36Updated 9 years ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆24Updated 4 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 11 months ago
• anlin00007 / OnTAD
  An Optimized Nested TAD caller for Hi-C data
  ☆22Updated 4 years ago
• paoyangchen-laboratory / methgo
  MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data
  ☆21Updated 8 years ago
• CSOgroup / CALDER2
  CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…
  ☆23Updated 3 months ago
• qunhualilab / hicrep
  R package to evaluate reproducibility of Hi-C data
  ☆10Updated 2 years ago
• js2264 / VplotR
  R package to easily generate "V-plots" of paired-end sequencing data over regions of interest
  ☆11Updated last year
• billgreenwald / pgltools
  Paired Genomic Loci Tool Suite
  ☆31Updated 2 years ago