Alternatives and similar repositories for PathLinker

Users that are interested in PathLinker are comparing it to the libraries listed below

• IOR-Bioinformatics / PCSF
  ☆14Updated 6 years ago
• opentargets-archive / opentargets-py
  Python client for the Open Targets REST API at targetvalidation.org
  ☆26Updated 5 months ago
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• nanxstats / protr
  🧬 Toolkit for generating various numerical features of protein sequences
  ☆53Updated 5 months ago
• NeilPearson-Lilly / TractaViewer
  ☆11Updated 6 years ago
• colin-combe / crosslink-viewer
  web based visualisation of CLMS data
  ☆13Updated 3 years ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆29Updated last year
• broadinstitute / g2papi
  Python Client Library for the G2P Portal API
  ☆15Updated 5 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated last month
• wilkelab / ProteinEvolutionToolbox
  ☆15Updated 9 years ago
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆21Updated 7 years ago
• dphansti / CORAL
  ☆29Updated 3 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆44Updated 3 weeks ago
• nanxstats / Rcpi
  💊 Molecular informatics toolkit with integration of bioinformatics and cheminformatics tools for drug discovery
  ☆37Updated last year
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 4 years ago
• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆53Updated 3 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆29Updated 8 years ago
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆10Updated 3 years ago
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆20Updated last year
• cusbg / MolArt
  MOLeculAR structure annoTator
  ☆33Updated last year
• iseekwonderful / PyPathway
  A python package for pathway visualization
  ☆37Updated 5 years ago
• cebel / pyuniprot
  Python package to query and analyse UniProt
  ☆25Updated 5 years ago
• tyo-nu / MINE-Database
  Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
  ☆20Updated last year
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 9 years ago
• MICommunity / ComplexViewer
  web based visualisation of molecular interaction data
  ☆12Updated 8 months ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago