Connect the dots in networks.
☆20Aug 28, 2020Updated 5 years ago
Alternatives and similar repositories for PathLinker
Users that are interested in PathLinker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Temporal Pathway Synthesizer☆17Jun 28, 2024Updated last year
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- ☆12Mar 1, 2025Updated last year
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 4 years ago
- reverse gene expression score☆16Sep 8, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- RCSM(Recommended Connectivity-map Scoring Methods)☆18Aug 2, 2019Updated 6 years ago
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Nov 12, 2024Updated last year
- ☆20Sep 28, 2021Updated 4 years ago
- Core App: REST API module for Cytoscape☆31Jul 31, 2025Updated 9 months ago
- A tool to calculate gender-bias in recommendation letters based on an implementation by Thomas Forth☆22May 4, 2023Updated 3 years ago
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆14Oct 22, 2023Updated 2 years ago
- Computational Analysis of Novel Drug Opportunities☆42Jan 9, 2026Updated 4 months ago
- Implementation of the cellular Potts model in pure javascript for fun an easy visualisation.☆11Mar 7, 2019Updated 7 years ago
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- JavaScript-based pathway viewer and editor☆37Feb 20, 2025Updated last year
- Courses & workshops led by members of the Krishnan Lab.☆24Sep 7, 2025Updated 8 months ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆22Jul 20, 2023Updated 2 years ago
- cyREST examples for Python users.☆11Feb 20, 2018Updated 8 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Mar 16, 2021Updated 5 years ago
- TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available ab…☆34Jul 5, 2024Updated last year
- This repository provides an implementation of the DTi2Vec tool, to identify Drug-Target interaction using network embedding and ensemble …☆12Sep 28, 2021Updated 4 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Apr 16, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆11Jan 20, 2020Updated 6 years ago
- ☆15Apr 3, 2025Updated last year
- Generating graph structures from OWL ontologies☆12Nov 21, 2017Updated 8 years ago
- A needle plot for mutation data☆27Aug 31, 2017Updated 8 years ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 8 months ago
- Command line tool to generate Kripo fingerprints from Protein Data Bank files.☆17Dec 26, 2022Updated 3 years ago
- A stateless password management solution☆10Sep 11, 2018Updated 7 years ago
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆16Jun 6, 2024Updated last year
- Network Visualization using both GUI and Programming☆29May 27, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Aug 8, 2022Updated 3 years ago
- SAveRUNNER (Searching off-lAbel dRUg aNd NEtwoRk) - a network-based approach for drug repurposing☆13Nov 27, 2024Updated last year
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14May 9, 2026Updated last week
- ☆26May 9, 2022Updated 4 years ago
- MGnify RESTful API☆10Apr 10, 2026Updated last month
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆11Aug 1, 2021Updated 4 years ago
- Use IBM Granite LLM as your Code Assistant in Visual Studio Code☆16Mar 14, 2025Updated last year