Connect the dots in networks.
☆21Aug 28, 2020Updated 5 years ago
Alternatives and similar repositories for PathLinker
Users that are interested in PathLinker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)☆19May 10, 2026Updated last month
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 9 years ago
- ☆12Mar 1, 2025Updated last year
- A simulation framework to analyze signal flows in complex networks☆15Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 4 years ago
- reverse gene expression score☆16Sep 8, 2023Updated 2 years ago
- RCSM(Recommended Connectivity-map Scoring Methods)☆18Aug 2, 2019Updated 6 years ago
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Nov 12, 2024Updated last year
- ☆20Sep 28, 2021Updated 4 years ago
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆14Oct 22, 2023Updated 2 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆28Aug 21, 2024Updated last year
- Computational Analysis of Novel Drug Opportunities☆42Jan 9, 2026Updated 5 months ago
- Implementation of the cellular Potts model in pure javascript for fun an easy visualisation.☆11Mar 7, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 4 years ago
- JavaScript-based pathway viewer and editor☆38Feb 20, 2025Updated last year
- Java library that implements the attractor finding method described in Chaos 23 (2) 025111, and the control method described in https://d…☆12Apr 20, 2021Updated 5 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆22Jul 20, 2023Updated 2 years ago
- Prize-Collecting Steiner Forests for Interactomes☆63Jun 18, 2024Updated last year
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Mar 16, 2021Updated 5 years ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- This repository provides an implementation of the DTi2Vec tool, to identify Drug-Target interaction using network embedding and ensemble …☆12Sep 28, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available ab…☆34Jul 5, 2024Updated last year
- Processing and analysis of data coming from Illumina sequencing machines☆10Apr 16, 2026Updated last month
- A GUI client for people who want to learn Git.☆30Oct 5, 2022Updated 3 years ago
- Generating graph structures from OWL ontologies☆12Nov 21, 2017Updated 8 years ago
- ☆15Apr 3, 2025Updated last year
- This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a n…☆31Jan 9, 2019Updated 7 years ago
- A needle plot for mutation data☆27Aug 31, 2017Updated 8 years ago
- SIU: A Million-Scale Structural Small Molecule-Protein Interaction Dataset for Unbiased Bioactivity Prediction☆17Feb 17, 2025Updated last year
- Command line tool to generate Kripo fingerprints from Protein Data Bank files.☆18Dec 26, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CAusal Reasoning for Network Identification with integer VALue programming in R☆62Dec 6, 2023Updated 2 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Sep 7, 2022Updated 3 years ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Asynchronous job and file i/o management for containers☆15Dec 9, 2022Updated 3 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36May 30, 2021Updated 5 years ago
- A stateless password management solution☆10Sep 11, 2018Updated 7 years ago
- An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and ot…☆12May 4, 2026Updated last month