☆18Aug 29, 2025Updated 8 months ago
Alternatives and similar repositories for ECMpy
Users that are interested in ECMpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Enzyme-constrained genome-scale models in python☆37Oct 25, 2023Updated 2 years ago
- A tutorial on cobrapy☆10Nov 23, 2022Updated 3 years ago
- ☆10Oct 21, 2023Updated 2 years ago
- REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies☆19Feb 13, 2026Updated 2 months ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆65Apr 2, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This is for the AI enzyme design course☆19Nov 10, 2025Updated 5 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆50Mar 23, 2026Updated last month
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- Metabolic Engineering Workbench☆42Jun 9, 2024Updated last year
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆27Jul 12, 2022Updated 3 years ago
- ☆16May 8, 2024Updated last year
- cameo - computer aided metabolic engineering & optimization☆124Nov 7, 2022Updated 3 years ago
- [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …☆32Mar 19, 2023Updated 3 years ago
- ☆29May 24, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Symbolic Kinetic Models with Python☆36Jun 4, 2025Updated 10 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated last year
- Implementing LRP (Layer-wise Relevance Propagation) for a sequence-to-sequence model with GRU layers.☆12Sep 8, 2023Updated 2 years ago
- ☆15Feb 27, 2024Updated 2 years ago
- ☆13Feb 20, 2022Updated 4 years ago
- Reaction Inclusion by Parsimony and Transcript Distribution☆13Feb 14, 2023Updated 3 years ago
- 先進ゲノム支援中級者講習会2019☆10Oct 11, 2019Updated 6 years ago
- ☆10Sep 29, 2023Updated 2 years ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆85Apr 19, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Toolbox for including enzyme constraints on a genome-scale model.☆87Apr 22, 2026Updated last week
- ☆17Jan 29, 2025Updated last year
- D3.js based visualizations of cobrapy metabolic models☆50Mar 10, 2020Updated 6 years ago
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated last month
- プログラミング演習1/実践データサイエンス☆11Apr 7, 2026Updated 3 weeks ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- A PyTorch implementation of various deep generative models, including Diffusion (DDPM), GAN, cGAN, and VAE.☆14Dec 9, 2024Updated last year
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆23Mar 29, 2021Updated 5 years ago
- nimo☆23Apr 21, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆17Updated this week
- ☆51Aug 13, 2025Updated 8 months ago
- ☆20Nov 24, 2025Updated 5 months ago
- ☆15Aug 22, 2023Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆45Jul 9, 2025Updated 9 months ago
- Computation of Microbial Ecosystems in Time and Space☆27Feb 26, 2026Updated 2 months ago