☆19Aug 29, 2025Updated 10 months ago
Alternatives and similar repositories for ECMpy
Users that are interested in ECMpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- Constraint-based Metabolic Modeling Course☆11Jul 25, 2022Updated 3 years ago
- A tutorial on cobrapy☆10Nov 23, 2022Updated 3 years ago
- REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies☆19Feb 13, 2026Updated 4 months ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆67May 28, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is for the AI enzyme design course☆19Nov 10, 2025Updated 7 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆52Updated this week
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- Metabolic Engineering Workbench☆42Jun 9, 2024Updated 2 years ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆28Jul 12, 2022Updated 3 years ago
- ☆17May 8, 2024Updated 2 years ago
- cameo - computer aided metabolic engineering & optimization☆127Nov 7, 2022Updated 3 years ago
- Symbolic Kinetic Models with Python☆37Jun 4, 2025Updated last year
- [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …☆32Mar 19, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆30May 24, 2024Updated 2 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Implementing LRP (Layer-wise Relevance Propagation) for a sequence-to-sequence model with GRU layers.☆12Sep 8, 2023Updated 2 years ago
- ☆16Feb 27, 2024Updated 2 years ago
- ☆13Feb 20, 2022Updated 4 years ago
- Reaction Inclusion by Parsimony and Transcript Distribution☆14Feb 14, 2023Updated 3 years ago
- 先進ゲノム支援中級者講習会2019☆10Oct 11, 2019Updated 6 years ago
- ☆10Sep 29, 2023Updated 2 years ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆90Jun 15, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Jan 29, 2025Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆91Jun 19, 2026Updated last week
- D3.js based visualizations of cobrapy metabolic models☆51Mar 10, 2020Updated 6 years ago
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated 3 months ago
- プログラミング演習1/実践データサイエンス☆11Updated this week
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 7 years ago
- ☆53Aug 13, 2025Updated 10 months ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆18May 11, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆21Nov 24, 2025Updated 7 months ago
- ☆15Aug 22, 2023Updated 2 years ago
- A PyTorch implementation of various deep generative models, including Diffusion (DDPM), GAN, cGAN, and VAE.☆17Dec 9, 2024Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- nimo☆28Apr 21, 2026Updated 2 months ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆46Jul 9, 2025Updated 11 months ago
- Computation of Microbial Ecosystems in Time and Space☆28May 5, 2026Updated last month