☆17May 8, 2024Updated 2 years ago
Alternatives and similar repositories for amn_release
Users that are interested in amn_release are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Base image providing dependencies for ASKCOS Docker images☆12Jun 14, 2024Updated 2 years ago
- ☆12Oct 4, 2024Updated 2 years ago
- ☆24Oct 19, 2023Updated 3 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Oct 7, 2026Updated 2 weeks ago
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Toolbox for including enzyme constraints on a genome-scale model. This repository holds GECKO 3.x; GECKO 4 is developed in CompMetEng/GEC…☆95Updated this week
- ☆11Dec 15, 2023Updated 2 years ago
- A flux balance analysis machine learning classifier for microbial GWAS☆14Jan 14, 2020Updated 6 years ago
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 7 years ago
- COnstraint Based Reconstruction and EXascale Analysis (in Julia)☆19Sep 26, 2025Updated last year
- Python interface for running COMETS simulations and analyzing the results☆15May 19, 2026Updated 5 months ago
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)☆14Jun 29, 2026Updated 3 months ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Dec 12, 2024Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆28Jul 6, 2023Updated 3 years ago
- the analysis script for PrismNet☆10May 17, 2020Updated 6 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆71Sep 22, 2026Updated 3 weeks ago
- Enzyme-constrained genome-scale models in python☆39Oct 25, 2023Updated 2 years ago
- Base library for serverless WASM on Cloudflare Workers☆17Mar 9, 2021Updated 5 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- A Python package for "classic" Constraint-Based Reconstruction and Analysis (COBRA) and the new COBRA with kinetics (COBRA-k). Link to do…☆22Sep 18, 2026Updated last month
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆19Jul 8, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Live preview of pandoc text☆19Dec 4, 2012Updated 13 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 4 years ago
- ☆12Jul 15, 2026Updated 3 months ago
- A python library for metabolic networks sampling and analysis☆69May 22, 2026Updated 4 months ago
- ☆21Aug 29, 2025Updated last year
- Computation of Microbial Ecosystems in Time and Space☆30Sep 8, 2026Updated last month
- Chemical Data Science and Engineering - University of Toronto☆31Oct 5, 2026Updated 2 weeks ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 8 years ago
- annotating microbial co-occurrence networks☆12Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆18Sep 25, 2026Updated 3 weeks ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- Analysis of ensembles of metabolic network reconstructions☆22Sep 3, 2026Updated last month
- Cytoscape interface to STRING and STITCH☆11Oct 10, 2026Updated last week
- Prediction of glycopeptide fragment mass spectra by deep learning☆12Feb 20, 2024Updated 2 years ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated 2 years ago
- MGnify RESTful API☆10Apr 10, 2026Updated 6 months ago