☆10Dec 15, 2023Updated 2 years ago
Alternatives and similar repositories for dGPredictor
Users that are interested in dGPredictor are comparing it to the libraries listed below
Sorting:
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- ☆24Oct 11, 2024Updated last year
- ☆20Jun 20, 2022Updated 3 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆36Oct 25, 2023Updated 2 years ago
- Python-code to analyse Raman spectroscopy☆14Apr 19, 2019Updated 6 years ago
- ☆15Updated this week
- ☆14Dec 2, 2024Updated last year
- ☆15Jan 21, 2025Updated last year
- This is an updated version of the MolecularTransformer of Schwaller et. al.☆14Jan 17, 2022Updated 4 years ago
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 6 years ago
- Python library & CLI to create, view and edit PFB files☆12Feb 19, 2026Updated last month
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- Base image providing dependencies for ASKCOS Docker images☆12Jun 14, 2024Updated last year
- CombiFF: automatized force-field optimization by the CSMS group at ETH Zürich☆18Sep 19, 2022Updated 3 years ago
- Code for "De novo molecular design with chemical language models"☆17Nov 10, 2021Updated 4 years ago
- fragbuilder is a tool to create, setup and analyze QM calculations on peptides.☆15Oct 31, 2014Updated 11 years ago
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 5 months ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- ☆18Dec 11, 2024Updated last year
- ☆20Sep 1, 2018Updated 7 years ago
- Cytoscape interface to STRING and STITCH☆11May 9, 2025Updated 10 months ago
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆186Jul 4, 2023Updated 2 years ago
- MGnify RESTful API☆10Feb 11, 2026Updated last month
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated last year
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- the MAVISp database for annotations and predictions of variant effects at the protein level☆13Feb 19, 2026Updated last month
- A flask app for chatting with gpt-3-turbo written primarily by gpt-3-turbo☆15Mar 24, 2023Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆49Updated this week
- A set of programs for the taxonomic analysis of genetic sequences☆14Jun 12, 2023Updated 2 years ago
- PanGenomePipeline☆16Apr 10, 2024Updated last year
- Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository…☆14Feb 13, 2023Updated 3 years ago
- Sync crosswords to the reMarkable cloud☆19Feb 1, 2025Updated last year
- Reinforcement Learning based bioretrosynthesis tool☆56Apr 2, 2025Updated 11 months ago
- Repository for c++ sample codes and descriptions for C++☆34Nov 18, 2025Updated 4 months ago
- ☆19Jul 18, 2024Updated last year