kexinhuang12345 / ml-genomics-resources
Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)
☆77Updated 3 years ago
Alternatives and similar repositories for ml-genomics-resources:
Users that are interested in ml-genomics-resources are comparing it to the libraries listed below
- Cancer Drug Response prediction using a Recommender System☆41Updated last year
- Biological Network Integration using Convolutions☆62Updated last year
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆112Updated 2 months ago
- Automated Modelling for Biological Evidence-based Research☆44Updated last year
- Explainable AI for Bioinformatics☆123Updated 2 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆94Updated last year
- CpG Transformer for imputation of single-cell methylomes☆38Updated last year
- Draw RNA secondary structures in python.☆47Updated 7 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆62Updated last month
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆168Updated last year
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆256Updated 2 weeks ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆35Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆57Updated 9 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆115Updated 3 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆52Updated 6 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆32Updated 2 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆113Updated 5 months ago
- Deep networks for protein functional inference☆171Updated last month
- ☆72Updated last year
- For anyone who are eager to applying deep learning in bioinformatics!☆124Updated 6 years ago
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆31Updated 4 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 5 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆151Updated 8 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆117Updated 2 years ago
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Updated 4 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago