kimmo1019 / DeepCDRLinks
Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network
☆90Updated 2 years ago
Alternatives and similar repositories for DeepCDR
Users that are interested in DeepCDR are comparing it to the libraries listed below
Sorting:
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆51Updated 4 years ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆113Updated 3 years ago
- ☆69Updated 2 years ago
- ☆17Updated 4 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆18Updated 2 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 5 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆28Updated 4 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆54Updated 3 months ago
- An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.☆160Updated 3 years ago
- A visible neural network model for drug response prediction☆148Updated 2 years ago
- ☆218Updated 3 years ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆125Updated 3 years ago
- ☆34Updated 9 months ago
- Drug Response Variational Autoencoder☆34Updated 6 years ago
- Contextual AI models for single-cell protein biology☆91Updated 9 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆129Updated 9 months ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆136Updated 3 years ago
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Updated 4 years ago
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆28Updated 3 weeks ago
- Network-based project to explore gene connectivity through biological scales☆23Updated last year
- A deep-learning framework for multi-omics integration☆29Updated 2 years ago
- TCGA Benchmark Tasks for Clinical Attribute Prediction based on Genome☆14Updated 4 years ago
- scPretrain: Multi-task self-supervised learning for cell type classification☆23Updated 3 years ago
- ☆39Updated 7 years ago
- ☆36Updated 2 years ago
- Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)☆80Updated 4 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆53Updated 4 months ago
- P-NET, Biologically informed deep neural network for prostate cancer classification and discovery☆162Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago