kimmo1019 / DeepCDRLinks
Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network
☆89Updated 2 years ago
Alternatives and similar repositories for DeepCDR
Users that are interested in DeepCDR are comparing it to the libraries listed below
Sorting:
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆112Updated 3 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆51Updated 4 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 5 years ago
- ☆68Updated 2 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆28Updated 4 years ago
- ☆17Updated 3 years ago
- An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.☆157Updated 3 years ago
- A visible neural network model for drug response prediction☆148Updated 2 years ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆18Updated 2 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆53Updated 2 months ago
- Drug Response Variational Autoencoder☆31Updated 6 years ago
- ☆218Updated 2 years ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆134Updated 3 years ago
- Contextual AI models for single-cell protein biology☆88Updated 7 months ago
- Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)☆80Updated 3 years ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆125Updated 3 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆124Updated 8 months ago
- ☆36Updated last year
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆20Updated 3 months ago
- Cancer Drug Response prediction using a Recommender System☆42Updated 2 years ago
- ☆36Updated 7 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆103Updated 4 years ago
- scPretrain: Multi-task self-supervised learning for cell type classification☆23Updated 3 years ago
- P-NET, Biologically informed deep neural network for prostate cancer classification and discovery☆160Updated 3 years ago
- A deep-learning framework for multi-omics integration☆27Updated 2 years ago
- ☆32Updated 8 months ago
- This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…☆106Updated 2 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 11 months ago
- A deep generative neural network based approach to impute drug response☆21Updated 4 years ago