kimmo1019 / DeepCDR
Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network
☆82Updated last year
Alternatives and similar repositories for DeepCDR:
Users that are interested in DeepCDR are comparing it to the libraries listed below
- A visible neural network model for drug response prediction☆141Updated last year
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆54Updated 4 years ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆16Updated last year
- Contextual AI models for single-cell protein biology☆85Updated 2 months ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆110Updated 3 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆101Updated 3 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆51Updated 11 months ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆49Updated 4 years ago
- Cancer Drug Response prediction using a Recommender System☆42Updated last year
- ☆66Updated last year
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…☆20Updated 3 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆27Updated 4 years ago
- Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆17Updated last month
- Drug Response Variational Autoencoder☆30Updated 6 years ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆130Updated 2 years ago
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆46Updated 4 months ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆116Updated 3 years ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆66Updated 2 years ago
- Repository for mRNA Paper and CodonBERT publication.☆128Updated 10 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆32Updated last week
- A deep generative neural network based approach to impute drug response☆20Updated 3 years ago
- ☆33Updated 7 years ago
- Implementation of ReSimNet for drug response similarity prediction☆40Updated last year
- PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…☆24Updated 3 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year
- A Graph Neural Network Model for prediction of the effectiveness of a drug on a given cancer cell lines☆17Updated 2 years ago
- This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…☆99Updated 2 years ago
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago