learning biology syllabus, geared for machine learning folks
☆136Dec 5, 2022Updated 3 years ago
Alternatives and similar repositories for biology-for-ai
Users that are interested in biology-for-ai are comparing it to the libraries listed below
Sorting:
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Feb 11, 2026Updated 3 weeks ago
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆248May 26, 2025Updated 9 months ago
- BioDWH2 is an easy-to-use, automated, graph-based data warehouse and mapping tool for bioinformatics and medical informatics.☆18Nov 21, 2025Updated 3 months ago
- Build PharMeBINet from different sources.☆20Jan 15, 2026Updated last month
- Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)☆98Aug 7, 2022Updated 3 years ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Jan 17, 2024Updated 2 years ago
- [NeurIPS 24] Official Implementation (Pytorch) of "Inversion-based Latent Bayesian Optimization"☆10Nov 15, 2024Updated last year
- A context aware tool for proteasomal cleavage predictions☆15May 30, 2025Updated 9 months ago
- ☆10Aug 29, 2012Updated 13 years ago
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 3 years ago
- ☆10Apr 19, 2020Updated 5 years ago
- Mapping sequencing data to De Bruijn graphs, fast☆30Feb 28, 2026Updated last week
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆13Jun 12, 2024Updated last year
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.☆102Jan 11, 2024Updated 2 years ago
- A general purpose recommender metrics library for fair evaluation.☆276Aug 22, 2023Updated 2 years ago
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆35Aug 14, 2023Updated 2 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- Interactive & explainable GNN for drug repurposing☆14Mar 14, 2024Updated last year
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Feb 21, 2026Updated 2 weeks ago
- 📊 Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Know…☆36Apr 19, 2022Updated 3 years ago
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆33Aug 1, 2023Updated 2 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆18Jan 18, 2026Updated last month
- Official PyTorch Implementation for Advancing Bayesian Optimization via Learning Correlated Latent Space (CoBO)☆18Apr 22, 2025Updated 10 months ago
- A Knowledge Graph for Relational Learning On Biological Data☆109Mar 21, 2024Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Jun 30, 2024Updated last year
- ☆34Nov 24, 2020Updated 5 years ago
- Protein Graph in Python for MetaPath-ML and more.☆20Jun 20, 2025Updated 8 months ago
- 🦎 Minimal Python command-line parser inspired by Facebook's Hydra. Handles and parses arbitrary arguments into dot-accessible nested dic…☆20Jan 20, 2022Updated 4 years ago
- Multi-Hop Logical Reasoning in Knowledge Graphs☆19Mar 2, 2021Updated 5 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 6 years ago
- A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)☆20Updated this week
- ☆19Sep 14, 2024Updated last year
- PGR-TK: Pangenome Research Tool Kit☆21Mar 13, 2025Updated 11 months ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Feb 1, 2024Updated 2 years ago
- Open-Vocabulary Video Question Answering: A New Benchmark for Evaluating the Generalizability of Video Question Answering Models (ICCV 20…☆18Apr 23, 2024Updated last year
- Filter and prioritize fusion calls☆20Feb 24, 2026Updated last week
- Make valid molecular graphs!☆23Mar 8, 2024Updated 2 years ago
- Official pytorch implementation of 'Relation-aware Language-Graph Transformer for Question Answering' (AAAI 2023)☆18Apr 25, 2023Updated 2 years ago