Ultra fast MSD radix sorter
☆10Jun 23, 2020Updated 5 years ago
Alternatives and similar repositories for RADULS
Users that are interested in RADULS are comparing it to the libraries listed below
Sorting:
- SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.☆10Apr 16, 2020Updated 5 years ago
- FOundation of stXXl and thriLL☆14Jan 24, 2024Updated 2 years ago
- High Performance Sorting Based Distributed memory K-mer counter☆15Dec 8, 2025Updated 2 months ago
- In-place Parallel Super Scalar Radix Sort (IPS²Ra)☆36Jan 15, 2025Updated last year
- Parallel Wavelet Tree and Wavelet Matrix Construction☆25Jun 27, 2023Updated 2 years ago
- Super Scalar Sample Sort in modern C++☆21Sep 30, 2020Updated 5 years ago
- A versatile compressor of third generation sequencing reads.☆52Mar 24, 2024Updated last year
- ☆28Apr 9, 2025Updated 10 months ago
- ☆24Apr 2, 2021Updated 4 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated 11 months ago
- Radix sort implemented i Java and C/C++ with benchmark.☆41Apr 28, 2011Updated 14 years ago
- ☆12Aug 23, 2023Updated 2 years ago
- Code for paper: Localized matrix factorization for recommendation based on matrix block diagonal forms☆10Jan 27, 2015Updated 11 years ago
- Selective Copying Task with Mamba Model. This repository contains a simple implementation for reproducing the selective copying task with…☆12Jun 3, 2024Updated last year
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- Extremely fast inplace radix sort☆43Jan 31, 2020Updated 6 years ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 3 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 12 years ago
- (PLEASE USE https://github.com/HanKruiger/tsNET) This is here for historical purpose only.☆10Mar 10, 2019Updated 6 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- A simple C++17 header-only library for generating SVG plots☆10Mar 17, 2024Updated last year
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- lightning☆11Oct 20, 2015Updated 10 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated last year
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- Convert DeepBind models to Keras☆11Jul 15, 2018Updated 7 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- distinct counters and aggregate functions for distinct estimation in PostgreSQL☆17Nov 3, 2019Updated 6 years ago
- Go port of wyhash v3☆14Nov 1, 2022Updated 3 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Estimate population history parameters from site pattern frequencies.☆12Dec 2, 2025Updated 3 months ago
- randomized SVD with single pass over data matrix☆10Apr 23, 2023Updated 2 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆10Feb 24, 2023Updated 3 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 7 months ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Sep 21, 2022Updated 3 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- A prettier index.html for listing public files and folders in Amazon S3 buckets.☆11Apr 4, 2016Updated 9 years ago