refresh-bio / RADULSLinks
Ultra fast MSD radix sorter
☆10Updated 5 years ago
Alternatives and similar repositories for RADULS
Users that are interested in RADULS are comparing it to the libraries listed below
Sorting:
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- In-place Parallel Super Scalar Radix Sort (IPS²Ra)☆35Updated last year
- An optimal space run-length Burrows-Wheeler transform full-text index☆68Updated 2 years ago
- A tool for merging large BWTs☆24Updated 5 years ago
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆48Updated 4 years ago
- Dynamic succinct/compressed data structures☆115Updated last month
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14Updated 7 years ago
- Parallel Wavelet Tree and Wavelet Matrix Construction☆25Updated 2 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆12Updated 2 months ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆109Updated 11 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 6 months ago
- FOundation of stXXl and thriLL☆14Updated 2 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Updated 2 years ago
- Implementation of a Backpack Quotient Filter☆13Updated 7 months ago
- A cheatsheet for most common Stringology tasks☆14Updated 4 years ago
- Succinct Data Structure Library 3.0☆101Updated last month
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆27Updated 5 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- 🔶 Compressed bitvector/container supporting efficient random access and rank queries☆46Updated last year
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Updated 2 months ago
- Bit packed vector of integral values☆28Updated last year
- Efficient construction of the BWT using string compression☆21Updated 8 months ago
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆66Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated 2 years ago
- ☆11Updated 2 years ago
- High Performance Sorting Based Distributed memory K-mer counter☆15Updated 2 months ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆93Updated 2 weeks ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆57Updated last year
- Compact Tree Representation☆16Updated 8 years ago
- Parallel Suffix Array, LCP Array, and Suffix Tree Construction☆51Updated 6 years ago