syntheticgenomics / sgidspace

Related projects ⓘ

Alternatives and complementary repositories for sgidspace

• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 2 years ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆51Updated 3 years ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆79Updated 9 months ago
• DennisGankin / species-aware-DNA-LM
  Species-aware DNA language modeling
  ☆17Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆44Updated 2 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆61Updated 7 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆83Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆65Updated 3 weeks ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆39Updated last month
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 2 years ago
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆37Updated 3 weeks ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆25Updated 6 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆48Updated 3 months ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆43Updated 5 years ago
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆32Updated 3 years ago
• mobiusklein / glypy
  Glycan Analysis and Glycoinformatics Library for Python
  ☆31Updated 2 months ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆45Updated 3 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 7 years ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆46Updated 5 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆56Updated 3 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆84Updated 3 months ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆40Updated this week
• churchlab / Deep_diversification_AAV
  Bioinformatics code for paper associated with deep diversification of AAV
  ☆39Updated 3 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆34Updated 5 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆34Updated 3 years ago
• kundajelab / DeepExplain
  A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability
  ☆8Updated 5 years ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆18Updated last year
• ISMB-ECCB-2019-Tutorial-AM4 / reproducible-computational-workflows
  A Practical Introduction to Reproducible Computational Workflows (ISMB/ECCB 2019 Tutorial AM4)
  ☆33Updated 5 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆20Updated 3 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆46Updated 6 months ago