Explore biomolecular pathways in Reactome from the command-line or a Python script
☆25Oct 12, 2024Updated last year
Alternatives and similar repositories for ReactomePy
Users that are interested in ReactomePy are comparing it to the libraries listed below
Sorting:
- Biotech with biopython☆10Aug 2, 2017Updated 8 years ago
- genomics, biochemistry, biotechnology, cell biology, biophysics, ecology☆16May 18, 2023Updated 2 years ago
- ZINC is an indie project supported by the community. Thank you!☆10Jul 27, 2025Updated 7 months ago
- This project is done for the Biomedicine, Biotechnology and Public Healthcare department of the University of Cádiz. They idea is to auto…☆18Jan 25, 2024Updated 2 years ago
- Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing☆52Feb 22, 2023Updated 3 years ago
- A free and collaborative space for Machine Learning 🤖 applied to Biology 🧬☆46Aug 14, 2024Updated last year
- Binomica Public Repository for Biological Parts☆28Oct 8, 2019Updated 6 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Jan 30, 2026Updated last month
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆14Nov 29, 2021Updated 4 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 8 years ago
- a protein descriptor for site prediction☆16Aug 9, 2019Updated 6 years ago
- A client for the Ensembl REST API written in the Python programming language☆29Dec 8, 2025Updated 2 months ago
- Robust and stable clustering of molecular dynamics simulation trajectories.☆19Sep 2, 2022Updated 3 years ago
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 4 years ago
- This package is meant to calculate the dihedral entropy of a biomolecule. However, it can also calculate the entropy of any binnable dat…☆23Feb 2, 2024Updated 2 years ago
- IPython notebooks to teach Genomics and Population Genetics☆21Feb 13, 2017Updated 9 years ago
- Visualize structure data from Biotite with PyMOL☆26Mar 16, 2025Updated 11 months ago
- Find nodes in hierarchical clustering that are statistically significant☆32Oct 15, 2017Updated 8 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆25Sep 5, 2016Updated 9 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Jul 11, 2025Updated 7 months ago
- My computational biology course as it evolves in real time☆14Aug 31, 2021Updated 4 years ago
- A comprehensive command-line based pipeline for the analysis of direct injection FT-ICR mass spectrometry data☆12Feb 18, 2026Updated last week
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated 8 months ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆35Feb 1, 2024Updated 2 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆36Jul 10, 2024Updated last year
- Adaptive string method implementation in AmberTools23 and Amber22☆14Jan 7, 2025Updated last year
- A tool that lauches docker jobs on Amazon EC2.☆10May 7, 2019Updated 6 years ago
- This repository contains a QSAR model that predicts the ability of a chemical compound to inhibit the gene associated with Alzheimer's, B…☆11Oct 1, 2021Updated 4 years ago
- This software package simulates the reduction of graphene oxide and calculates the optical response of the generated sp2 domains☆11Dec 22, 2016Updated 9 years ago
- ☆93Updated this week
- Program designed to look at X-ray images of Lungs, to analyse and identify tumors. Developed in Matlab, uses custom filter and threshold …☆10Mar 18, 2017Updated 8 years ago
- Python package providing functionality and plotting for chemistry method comparison☆16Feb 28, 2024Updated 2 years ago
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated last year
- An android VoIP application using native SIP API & ConnectionService (CallKit in iOS) API☆10Mar 13, 2020Updated 5 years ago
- ☆12Jan 27, 2023Updated 3 years ago
- Calculating paramagnetic NMR effects in proteins☆10May 20, 2022Updated 3 years ago
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆10Oct 2, 2025Updated 5 months ago
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Feb 22, 2025Updated last year