Alternatives and similar repositories for Misc_Code

Users that are interested in Misc_Code are comparing it to the libraries listed below

• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆71Updated 3 months ago
• vmaffei / dada2_to_picrust
  Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)
  ☆19Updated 7 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 5 months ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated 3 months ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆32Updated 3 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated 2 years ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated 6 months ago
• kylebittinger / qiimer
  Quantitative Insights Into Microbial Ecology - parsing and plotting functions for R
  ☆18Updated 8 years ago
• pnnl / hundo
  Snakemake-based amplicon processing protocol for 16S and ITS sequences.
  ☆13Updated last year
• wejlab / animalcules
  R shiny app for interactive microbiome analysis
  ☆56Updated 8 months ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 6 years ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated 3 weeks ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆34Updated 5 years ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆104Updated 2 months ago
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆67Updated 5 years ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆53Updated last month
• spholmes / F1000_workflow
  ☆43Updated 8 years ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆39Updated 2 years ago
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆19Updated last year
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 5 years ago
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated 6 months ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆48Updated last year
• compmetagen / micca
  micca - MICrobial Community Analysis
  ☆19Updated 5 years ago
• bacteria-archaea-traits / bacteria-archaea-traits
  A synthesis of bacterial and archaeal phenotypic trait data
  ☆35Updated 2 years ago
• inodb / 2014-5-metagenomics-workshop
  Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm
  ☆18Updated 11 years ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆28Updated last year
• rdpstaff / classifier
  RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
  ☆59Updated 3 years ago
• JTFouquier / ghost-tree
  creating hybrid-gene phylogenetic trees for diversity analyses
  ☆30Updated 3 years ago
• danlwarren / RWTY
  R We There Yet?
  ☆32Updated 10 months ago
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated 2 years ago