jodyphelan / genomics_courseLinks
☆12Updated 3 months ago
Alternatives and similar repositories for genomics_course
Users that are interested in genomics_course are comparing it to the libraries listed below
Sorting:
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆193Updated 2 months ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 4 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- snipit: summarise snps relative to your reference sequence☆161Updated last month
- Sydney Phylogenetics Workshop☆62Updated this week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆128Updated last month
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated last year
- ☆60Updated 5 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆147Updated this week
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆88Updated last month
- BSR-Based Allele Calling Algorithm☆147Updated this week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆152Updated 2 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆40Updated 3 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆77Updated 4 months ago
- Recovering genes from targeted sequence capture data☆124Updated 5 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆158Updated 2 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 months ago
- "Reads to report" for public health and clinical microbiology☆140Updated last year
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆48Updated 10 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆71Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 2 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago
- Using ggtree to build phylogenetic trees☆47Updated 7 months ago
- ☆71Updated 3 weeks ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated 2 months ago
- Metatranscriptomics Tutorial☆62Updated last year
- EasyCodeML: A visual tool for analysis of selection using CodeML☆81Updated 2 years ago