jmzeng1314 / my-perlLinks
some short but practical PERL script in NGS data analysis
☆16Updated 7 years ago
Alternatives and similar repositories for my-perl
Users that are interested in my-perl are comparing it to the libraries listed below
Sorting:
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆14Updated 13 years ago
- ☆31Updated 7 years ago
- ☆50Updated 6 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- DEG analysis and KEGG/GO enrichment analysis☆69Updated 7 years ago
- ChIP-seq analysis notes from Tommy Tang☆19Updated 9 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…☆50Updated 2 years ago
- Scripts for next generation sequencing☆49Updated 5 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- ☆10Updated 9 years ago
- DCC/DAC methylation pipeline source☆56Updated 5 years ago
- ☆89Updated 4 years ago
- My own tools code for NGS data analysis (Next Generation Sequencing)☆30Updated 6 years ago
- ☆58Updated last month
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 6 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- ChIP-seq and ATAC-seq analysis☆13Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- release version☆54Updated 3 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆50Updated last month
- Allele-specific alignment sorting☆58Updated 2 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- A shiny app for TBtools data plot☆29Updated 9 years ago
- 361 Division - Scientific Training, Education and Learning☆28Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago