Alternatives and similar repositories for cellcutter:

Users that are interested in cellcutter are comparing it to the libraries listed below

• jiyuuchc / lacss
  A deep learning model for single cell segmentation from microsopy images.
  ☆33Updated this week
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆31Updated 3 weeks ago
• ShahiraAbousamra / til_classification
  ☆14Updated last year
• serrob23 / falsecolor
  FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…
  ☆30Updated 3 years ago
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆23Updated this week
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆65Updated 7 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆34Updated last year
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆32Updated last year
• cellimnet / scellseg-publish
  A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.
  ☆10Updated 10 months ago
• kevindehaan / stain-transformation
  ☆40Updated 3 years ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆52Updated 2 years ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆18Updated 2 months ago
• ChristianMarzahl / WsiRegistration
  Robust quad-tree based registration on whole slide images
  ☆19Updated 8 months ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆23Updated 2 months ago
• masih4 / NuInsSeg
  NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images
  ☆28Updated 7 months ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆51Updated 2 years ago
• michaellee1 / CellSeg
  ☆22Updated last year
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 8 months ago
• funkelab / cellulus
  Unsupervised Instance Segmentation in Microscopy
  ☆21Updated 10 months ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆35Updated last week
• ashleylk / CODA
  version 1 scripts for CODA
  ☆41Updated 9 months ago
• AstroPathJHU / AstroPathPipeline
  The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …
  ☆18Updated last year
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆31Updated 4 years ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆75Updated this week
• MarkZaidi / Universal-StarDist-for-QuPath
  Transfer trained StarDist models across imaging modalities
  ☆2Updated 5 months ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆58Updated this week
• haranrk / DigiPathAI
  Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
  ☆67Updated last month
• maragraziani / interpretAI_DigiPath
  Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021
  ☆21Updated 3 years ago
• digitalpathologybern / hover_next_inference
  Inference code for HoVer-NeXt
  ☆28Updated last week
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆77Updated last year