jiaqingxie / Machine-Learning-in-Genomes

Related projects ⓘ

Alternatives and complementary repositories for Machine-Learning-in-Genomes

• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆34Updated 2 years ago
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆21Updated 3 weeks ago
• ShenLab / gMVP
  ☆20Updated last year
• epigen / KPNN
  Knowledge-primed neural networks
  ☆34Updated last year
• HarveyYan / RNAonGraph
  A repository for neural representational learning of RNA secondary structures
  ☆31Updated 4 years ago
• TeamSundar / TransDTI
  TransDTI: Transformer-based language models for estimating DTIs and building a drug-recommendation workflow
  ☆11Updated 2 years ago
• astrazeneca-cgr-publications / DrugnomeAI-release
  ☆14Updated last month
• lyjps / Struct2GO
  Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information
  ☆25Updated 8 months ago
• TencentAILabHealthcare / DeepAIR
  ☆30Updated last year
• kekegg / DLEPS
  A Deep Learning based Efficacy Prediction System for drug discovery
  ☆61Updated last year
• ntranoslab / esm-variants
  ☆66Updated last year
• krishnanlab / obnb
  A Python toolkit for setting up benchmarking dataset using biomedical networks
  ☆21Updated 2 weeks ago
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆34Updated last year
• Superzchen / iFeatureOmega-CLI
  iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…
  ☆28Updated last year
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆45Updated 3 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆33Updated last month
• pth1993 / DeepCE
  A deep learning framework for high-throughput mechanism-driven phenotype screening
  ☆46Updated 3 years ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆30Updated 5 months ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆23Updated 7 months ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆11Updated 3 years ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆31Updated 2 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆36Updated 8 months ago
• yanzhanglab / Graph2GO
  Graph-based representation learning method for protein function prediction
  ☆24Updated 4 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆44Updated 5 years ago
• s6juncheng / BERTMHC
  MHC-peptide class II interaction prediction, binding, presentation
  ☆21Updated 2 years ago
• bsml320 / VAEN
  A deep generative neural network based approach to impute drug response
  ☆18Updated 3 years ago
• hosseinshn / MOLI
  MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction
  ☆53Updated 4 years ago
• NKI-AI / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆25Updated 6 months ago
• mims-harvard / SPECTRA
  Spectral Framework For AI Model Evaluation
  ☆24Updated last month
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆46Updated 5 months ago