Alternatives and similar repositories for STAPLER:

Users that are interested in STAPLER are comparing it to the libraries listed below

• pmoris / ImRex
  Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes
  ☆15Updated last year
• viragbioinfo / IMMREP_2022_TCRSpecificity
  ☆19Updated 2 years ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆18Updated 2 months ago
• piercelab / tcrmodel2
  ☆37Updated 5 months ago
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆31Updated 2 years ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆50Updated 2 years ago
• ntranoslab / esm-variants
  ☆71Updated last year
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆71Updated 11 months ago
• JiangBioLab / DLpTCR
  Predicting immunogenic peptide recognized by TCR through ensemble deep learning
  ☆14Updated 10 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆65Updated last year
• alchemab / bcr-repertoire-papers
  Collection of papers related to BCR repertoire analyses
  ☆18Updated 3 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆41Updated last year
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• regeneron-mpds / TCRAI
  ☆16Updated 3 years ago
• jiangdada1221 / TEINet
  TEINet: a deep learning framework for prediction of TCR-epitope binding specificity
  ☆15Updated last year
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 2 years ago
• lulab / OligoFormer
  ☆21Updated 2 months ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆23Updated 2 years ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆33Updated 2 months ago
• Doudna-lab / GARNET_DL
  ☆34Updated last month
• ShenLab / gMVP
  ☆20Updated 2 years ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆34Updated 6 months ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆24Updated last year
• haiyuan-yu-lab / PIONEER
  ☆24Updated 2 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆48Updated 4 months ago
• statbiophys / soNNia
  ☆14Updated this week
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆27Updated this week
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆50Updated 10 months ago