aplbrain / saberLinks
☆17Updated 2 years ago
Alternatives and similar repositories for saber
Users that are interested in saber are comparing it to the libraries listed below
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 4 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Updated 4 years ago
- ☆12Updated last year
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆22Updated 3 weeks ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆91Updated 4 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Updated 2 years ago
- COmmon COordinate FRAMEwork in R☆37Updated 5 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 3 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆26Updated 4 years ago
- Algorithmic and Utility Extensions for the Imaris Program☆19Updated 2 months ago
- Interactive visualization of spatial omics data☆72Updated last week
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 9 months ago
- ☆29Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- Toolbox for the analysis of smFISH images.☆68Updated 2 years ago
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago
- MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.☆11Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 weeks ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 6 months ago
- collection of mass spectrometry imaging workflows☆18Updated 5 months ago
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆21Updated 3 weeks ago
- The ImageJ framework for quantification of neuronal anatomy☆52Updated last week
- Lectures for a napari training course☆51Updated 2 years ago