Alternatives and similar repositories for saber

Users that are interested in saber are comparing it to the libraries listed below

• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 7 months ago
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆16Updated 9 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆82Updated this week
• AllenInstitute / cocoframer
  COmmon COordinate FRAMEwork in R
  ☆36Updated 5 years ago
• JaneliaSciComp / exllsm-circuit-reconstruction
  Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery
  ☆13Updated 2 months ago
• berenslab / mini-atlas
  Phenotypic variation of transcriptomic cell types in mouse motor cortex
  ☆25Updated 3 years ago
• cantin-ortiz / molecular-atlas
  This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".
  ☆16Updated 4 years ago
• dgoodwin208 / ExSeqProcessing
  ☆12Updated last year
• BIOP / abba_python
  ABBA, controlled from python
  ☆13Updated 3 months ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆50Updated last week
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆35Updated 3 years ago
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 4 years ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated 3 months ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆21Updated 2 weeks ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 10 months ago
• mjin1812 / SMART
  Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping
  ☆14Updated 3 years ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆88Updated 3 years ago
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated 8 months ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆22Updated last week
• RoysamLab / whole_brain_analysis
  ☆12Updated 2 years ago
• CAVEconnectome / nglui
  ☆12Updated last week
• Morwey / ezreverse
  A Python Shiny project with Joachim Goedhart
  ☆18Updated 11 months ago
• ABIF-McGill / MethodsJ2
  MethodsJ2
  ☆14Updated 3 years ago
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 3 years ago
• SystemsResearch / CUBIC_nprot
  Code for the image processing and analysis described our Nature Protocols paper.
  ☆10Updated 10 years ago
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• danionella / warpfield
  GPU-based 3D non-rigid volumetric registration
  ☆32Updated 3 weeks ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated this week