aplbrain / saberLinks
☆17Updated 2 years ago
Alternatives and similar repositories for saber
Users that are interested in saber are comparing it to the libraries listed below
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆92Updated 4 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 4 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- ☆13Updated last year
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆26Updated 4 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Updated 4 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆25Updated last month
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 3 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 10 months ago
- COmmon COordinate FRAMEwork in R☆37Updated 5 years ago
- Tools for distributed alignment of massive images☆89Updated last week
- ☆29Updated last year
- manually align specimens to annotated 3D spaces☆21Updated 2 years ago
- ☆33Updated 4 months ago
- Toolbox for the analysis of smFISH images.☆70Updated 2 years ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Updated 8 months ago
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Updated 2 years ago
- A system for building mouse brain atlas from histology series☆11Updated 5 years ago
- ☆45Updated 5 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 4 months ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- ABBA, controlled from python☆16Updated 3 weeks ago
- Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects☆14Updated 2 years ago
- Lectures for a napari training course☆51Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆20Updated last month