aplbrain / saberLinks
☆17Updated last year
Alternatives and similar repositories for saber
Users that are interested in saber are comparing it to the libraries listed below
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 7 months ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 9 years ago
- Tools for distributed alignment of massive images☆82Updated this week
- COmmon COordinate FRAMEwork in R☆36Updated 5 years ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Updated 2 months ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆25Updated 3 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Updated 4 years ago
- ☆12Updated last year
- ABBA, controlled from python☆13Updated 3 months ago
- The ImageJ framework for quantification of neuronal anatomy☆50Updated last week
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated 2 weeks ago
- StarDist plugin for napari☆38Updated 10 months ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 3 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆88Updated 3 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 8 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated last week
- ☆12Updated 2 years ago
- ☆12Updated last week
- A Python Shiny project with Joachim Goedhart☆18Updated 11 months ago
- MethodsJ2☆14Updated 3 years ago
- ☆18Updated 3 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- ☆45Updated 5 years ago
- Lectures for a napari training course☆50Updated last year
- GPU-based 3D non-rigid volumetric registration☆32Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week