☆17Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for saber
Users that are interested in saber are comparing it to the libraries listed below
Sorting:
- Patterns commonly encountered when writing CWL workflows☆26Mar 30, 2022Updated 3 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆13Oct 9, 2025Updated 4 months ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆38Feb 5, 2026Updated 3 weeks ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36May 28, 2025Updated 9 months ago
- ☆13Feb 27, 2024Updated 2 years ago
- ☆12Aug 23, 2023Updated 2 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Nearby NYC Citibike Stations via SMS☆11Oct 18, 2025Updated 4 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Feb 25, 2024Updated 2 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 9 months ago
- ☆11Apr 22, 2022Updated 3 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 4 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Static Huffman coding☆10Apr 3, 2017Updated 8 years ago
- Website about the project WorkflowHub☆12Feb 12, 2026Updated 2 weeks ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- Infer metadata for your downstream analysis straight from your RNA-Seq data☆15Nov 20, 2024Updated last year
- The Database Infrastructure for Mass Spectrometry (DIMSpec) project☆26Jun 27, 2025Updated 8 months ago
- ☆11Oct 21, 2016Updated 9 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Archive of original RNAseq.wiki tutorial that accompanied PLoS Comp Bio paper☆13Nov 13, 2016Updated 9 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆12Dec 8, 2025Updated 2 months ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- IMGT segment library converted to RepSeq.IO JSON format☆13Mar 21, 2023Updated 2 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated last year
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- ☆10Jun 16, 2022Updated 3 years ago