Alternatives and similar repositories for MouseCortex:

Users that are interested in MouseCortex are comparing it to the libraries listed below

• ChristophH / in-lineage
  Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"
  ☆24Updated 6 years ago
• AllenInstitute / tasic2018analysis
  Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.
  ☆24Updated 6 years ago
• saeyslab / brainimmuneatlas
  Overview of the scripts used to analyse the brainimmuneatlas data
  ☆19Updated 4 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆43Updated last year
• bioturing / signac
  An analytics package for single cell data
  ☆22Updated 2 years ago
• maggiecrow / MetaNeighbor
  ☆49Updated 7 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• xgaoo / ClusterMap
  ClusterMap is an R package to analyze and compare two or more single cell expression datasets.
  ☆20Updated 2 years ago
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆17Updated 3 years ago
• broadinstitute / BipolarCell2016
  ☆22Updated 5 years ago
• stephaniehicks / spatialexperiment-analysis
  repo to explore spatial data in R/Bioconductor and Python
  ☆12Updated 5 years ago
• vanheeringen-lab / scepia
  Single Cell Epigenome-based Inference of Activity
  ☆19Updated last year
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 2 years ago
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆45Updated last year
• SpatialTranscriptomicsResearch / st_viewer
  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
  ☆13Updated 3 years ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆23Updated 2 years ago
• LieberInstitute / 10xPilot_snRNAseq-human
  10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC
  ☆22Updated 2 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• linnarsson-lab / adolescent-mouse
  Analysis pipeline for the adolescent mouse nervous system project
  ☆24Updated 6 years ago
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆36Updated last week
• pachterlab / BHGP_2022
  ☆21Updated 2 years ago
• neurogenomics / reanalysis_Mathys_2019
  A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…
  ☆14Updated last year
• forrest-lab / scMatch
  scMatch: a single-cell gene expression profile annotation tool using reference datasets
  ☆21Updated 4 years ago
• shenorrLabTRDF / cellAlign
  ☆39Updated 4 years ago
• JCVenterInstitute / FRmatch
  Cell type matching in single-cell RNA-sequencing data using FR-Match
  ☆19Updated 5 months ago
• lima1 / sttkit
  Pipeline for SpatialTranscriptomics and 10X Visium data
  ☆21Updated 7 months ago
• massonix / tabula_muris_networks
  R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)
  ☆12Updated 3 years ago
• BaderLab / scRNAseqWorkflow
  Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz
  ☆12Updated 4 years ago
• linnarsson-lab / awesome-single-cell
  List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
  ☆14Updated 8 years ago
• Teichlab / cellity
  ☆37Updated 8 years ago