A Practical Introduction to Reproducible Computational Workflows (ISMB/ECCB 2019 Tutorial AM4)
☆34Aug 12, 2019Updated 6 years ago
Alternatives and similar repositories for reproducible-computational-workflows
Users that are interested in reproducible-computational-workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 4 months ago
- Materials for ELIXIR-EXCELERATE Train The Trainer workshops and courses☆17Jan 28, 2020Updated 6 years ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆23Apr 1, 2026Updated 2 weeks ago
- ECCB2021 tutorial: Inside the ‘Black Box’: Explainable Deep Learning Models For Image and Sequence Classification☆10Sep 3, 2021Updated 4 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago
- GTDB => NCBI☆15Nov 14, 2024Updated last year
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- A software suite for automatic treatment, analysis and plotting of large and multivariable datasets of bioNMR peaklists.☆12Apr 17, 2020Updated 5 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- A tool for evaluating RNA seq mapping☆22Jul 12, 2019Updated 6 years ago
- Shortcuts to make git pull requests take less keystrokes☆12Dec 8, 2023Updated 2 years ago
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Jul 15, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Misc. documents for the Bioinformatics Open Source Conference (BOSC), https://www.open-bio.org/events/bosc/☆13Apr 6, 2026Updated last week
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 9 years ago
- Genome scale metabolic models in SBML format☆10Nov 16, 2021Updated 4 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Apr 2, 2026Updated last week
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- Software for analyzing high dimensional dose-response data☆19Mar 18, 2026Updated 3 weeks ago
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 7 months ago
- Registration of Galaxy Tools in Elixir☆12Jan 7, 2019Updated 7 years ago
- nmrXiv is currently developed as the FAIR, consensus-driven NMR data repository and computational platform. The ultimate goal is to accel…☆22Apr 2, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 'Open to Discussion' is a project aimed at igniting conversations about open science.☆13May 10, 2018Updated 7 years ago
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆17Nov 13, 2017Updated 8 years ago
- Machine learning framework to quantify pathogenicity of structural variants☆12Dec 3, 2020Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- Tool to compute bond and angle force field parameters with the Seminario method☆14Apr 15, 2018Updated 8 years ago
- Generating tool descriptors from bio.tools☆10Jun 13, 2018Updated 7 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- UltimaGenomics repository for workflows compatible with AWS HealthOmics☆29Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A collection of tools to work with Illumina's basespace☆13Apr 10, 2019Updated 7 years ago
- Notes and experiments in Jupyter dashboarding☆16Apr 17, 2021Updated 4 years ago
- New home of the Covid19-NP-Swab NP-swab manufacturing project☆16Jul 24, 2020Updated 5 years ago
- International BioHackathon Directory of Events, Projects and Communities☆12Mar 24, 2026Updated 3 weeks ago
- ☆19Apr 24, 2022Updated 3 years ago
- The javascript implementation of the MMTF format.☆11Jun 26, 2017Updated 8 years ago
- ☆10Oct 21, 2023Updated 2 years ago