A Practical Introduction to Reproducible Computational Workflows (ISMB/ECCB 2019 Tutorial AM4)
☆34Aug 12, 2019Updated 6 years ago
Alternatives and similar repositories for reproducible-computational-workflows
Users that are interested in reproducible-computational-workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 8 months ago
- Materials for ELIXIR-EXCELERATE Train The Trainer workshops and courses☆17Jan 28, 2020Updated 6 years ago
- ECCB2021 tutorial: Inside the ‘Black Box’: Explainable Deep Learning Models For Image and Sequence Classification☆11Sep 3, 2021Updated 4 years ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆26Updated this week
- Official repo of the Biomeccanica Multiscala course (prof. Marco A. Deriu) - Master Degree in Biomedical engineering, Politecnico di Tori…☆12Jan 2, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome inter…☆13Jun 17, 2022Updated 4 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- GTDB => NCBI☆15Nov 14, 2024Updated last year
- MHC-II presentation predictor☆13Aug 11, 2023Updated 2 years ago
- COSMO: COarse-grained Simulation of intrinsically disordered prOteins with openMM☆15Jul 14, 2026Updated last week
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- ☆10Jan 2, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- Notebooks which will provide a demo of Qgrid functionality☆20Jan 16, 2020Updated 6 years ago
- BMRB data visualization tools using python Plotly☆15Aug 21, 2025Updated 11 months ago
- Shortcuts to make git pull requests take less keystrokes☆12Dec 8, 2023Updated 2 years ago
- Machine learning framework to quantify pathogenicity of structural variants☆12Dec 3, 2020Updated 5 years ago
- nmrXiv is currently developed as the FAIR, consensus-driven NMR data repository and computational platform. The ultimate goal is to accel…☆22Updated this week
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Jul 15, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 10 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Jul 15, 2026Updated last week
- ☆15Jan 27, 2025Updated last year
- reactive MD python pipeline for GROMACS using Kinetic Monte Carlo / Molecular Dynamics (KIMMDY)☆14Nov 19, 2019Updated 6 years ago
- Software for analyzing high dimensional dose-response data☆19Mar 18, 2026Updated 4 months ago
- ☆19Apr 7, 2025Updated last year
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 10 months ago
- Open source tools and papers for structural variant analysis.☆12Feb 24, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆19Mar 26, 2026Updated 3 months ago
- 'Open to Discussion' is a project aimed at igniting conversations about open science.☆13May 10, 2018Updated 8 years ago
- Owlery is a set of REST web services which allow querying of an OWL reasoner containing a configured set of ontologies.☆17Aug 13, 2024Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- Issue tracker, technical wiki, and example markup☆64Updated this week
- Generating tool descriptors from bio.tools☆10Jun 13, 2018Updated 8 years ago