Python and ImageJ scripts designed to track single cells and analyze fluorescence
☆15Dec 16, 2021Updated 4 years ago
Alternatives and similar repositories for CellTracking
Users that are interested in CellTracking are comparing it to the libraries listed below
Sorting:
- Cell tracking using TensorFlow and BayesianTracker☆22Jan 17, 2022Updated 4 years ago
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆22Jul 8, 2024Updated last year
- Single-cell fluorescence microscopy data analysis☆26Jul 22, 2021Updated 4 years ago
- Time Series Analysis and Its Applications, Ed 5☆20Dec 17, 2025Updated 2 months ago
- NTNU NanoLab process database☆15Apr 1, 2025Updated 10 months ago
- Designs for 3D printed parts that were developed in the Zhuang Lab.☆11Dec 2, 2020Updated 5 years ago
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- Dockerfile to build a working CellProfiler (http://cellprofiler.org/) image☆11Jun 2, 2022Updated 3 years ago
- This repository implements the Fast Iterative Method (FIM) for use in python☆12Apr 15, 2024Updated last year
- High-throughput droplet microfluidic devices with fluorescence detection systems provide several advantages over conventional end-point c…☆12Mar 6, 2019Updated 6 years ago
- Interactive map of neural connections in the nematode C. elegans. Online at http://nemanode.org.☆11May 30, 2024Updated last year
- Front-end web for CCSE Open Source Mirrors☆14Jan 7, 2026Updated last month
- ☆13Updated this week
- A Graphical program to Manage, Configure, Launch, and Monitor an INDI WebManager on OS X and Linux☆11Oct 12, 2024Updated last year
- Implementation of Mejias et al. 2016: Feedforward and feedback frequency-dependent interactions in a large-scale laminar network of the p…☆10Nov 25, 2025Updated 3 months ago
- ApE- A plasmid Editor☆13Jan 12, 2022Updated 4 years ago
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Apr 7, 2024Updated last year
- This is a repository containing notebooks demonstrating along corresponding with YouTube videos, coding strategies to various problems.☆10Aug 23, 2021Updated 4 years ago
- Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nu…☆11Aug 19, 2020Updated 5 years ago
- Tutorial Jupyter Notebooks maintained by the Rubin Observatory Community Science Team.☆18Updated this week
- Transfer entropy (conditional mutual information) estimators for the Julia language☆14Nov 6, 2022Updated 3 years ago
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆18Updated this week
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆16Jun 2, 2025Updated 8 months ago
- Managing Open and Reproducible Computational Projects☆12Jan 21, 2025Updated last year
- single particle tracking code for colloidal research☆15Oct 26, 2013Updated 12 years ago
- ☆11Jul 31, 2019Updated 6 years ago
- Software for camera acquisition and tracking of particles☆11Nov 22, 2022Updated 3 years ago
- napari widgets for start-to-finish batch processing☆15Jan 2, 2026Updated last month
- Conway's Game of Life written in Fortran 77 for FreeDOS☆11Oct 8, 2021Updated 4 years ago
- A script to copy/backup the backup files from a Proxmox server to an external harddrive and a tape device☆10Apr 30, 2025Updated 10 months ago
- Handmade ImageJ / Fiji LUTs for microscopy, scientific good visualization and art.☆13Jan 9, 2025Updated last year
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆18Jun 9, 2022Updated 3 years ago
- libSavitar is a c++ implementation of 3mf loading with SIP python bindings.☆11Jan 5, 2026Updated last month
- A low-cost meteor radiometer☆12Aug 22, 2018Updated 7 years ago
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆51Jan 22, 2026Updated last month
- This project focuses on tracking cancer cell based on Fuhua et al. [1], which used watershed algorithm to segment cells and built a featu…☆39Apr 10, 2019Updated 6 years ago
- Mutational antigenic profiling of SARS-CoV-2 RBD against human convalescent sera from the HAARVI cohort☆10Mar 3, 2021Updated 4 years ago
- PC monitor brightness controller (control the actual monitor's backlight!) supports multi-monitor.☆10Oct 13, 2019Updated 6 years ago
- khadas rescue system☆13Jun 3, 2020Updated 5 years ago