Python and ImageJ scripts designed to track single cells and analyze fluorescence
☆15Dec 16, 2021Updated 4 years ago
Alternatives and similar repositories for CellTracking
Users that are interested in CellTracking are comparing it to the libraries listed below
Sorting:
- Cell tracking using TensorFlow and BayesianTracker☆22Jan 17, 2022Updated 4 years ago
- Algorithm for round cells identification in the brightfield microscopy images.☆21Aug 19, 2023Updated 2 years ago
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- Dockerfile to build a working CellProfiler (http://cellprofiler.org/) image☆11Jun 2, 2022Updated 3 years ago
- Python scripts for tracking cells in fluorescent microscopy.☆11Dec 10, 2017Updated 8 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 3 years ago
- This project focuses on tracking cancer cell based on Fuhua et al. [1], which used watershed algorithm to segment cells and built a featu…☆39Apr 10, 2019Updated 6 years ago
- Single-cell fluorescence microscopy data analysis☆26Jul 22, 2021Updated 4 years ago
- (Biological) Cell Tracker for Microscopy Image Analysis☆15May 10, 2017Updated 8 years ago
- [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.☆10Jan 11, 2022Updated 4 years ago
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 2 years ago
- A repository for data package representation for cell tracking data☆13Apr 30, 2020Updated 5 years ago
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆22Jul 8, 2024Updated last year
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Apr 7, 2024Updated last year
- Lineage Mapper Fiji plugin and MATLAB source code☆19Aug 4, 2022Updated 3 years ago
- SurGen: 1020 H&E-stained Whole Slide Images With Survival and Genetic Markers☆19Nov 2, 2025Updated 4 months ago
- Pair correlation function analysis of fluorescence fluctuations in big image time series.☆10Feb 25, 2026Updated 3 weeks ago
- How-to: Pi-Hole + DNSCrypt + Anonymized DNS + Cloudflare DoH Setup on Raspberry Pi 4☆12Apr 1, 2020Updated 5 years ago
- LLM App with Web Search for YouTube video 🎥☆30Feb 9, 2025Updated last year
- Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nu…☆11Aug 19, 2020Updated 5 years ago
- napari widgets for start-to-finish batch processing☆15Mar 1, 2026Updated 2 weeks ago
- This repository implements the Fast Iterative Method (FIM) for use in python☆12Apr 15, 2024Updated last year
- Scripts to perform active learning as described in the referenced article.☆13Sep 17, 2025Updated 6 months ago
- Managing Open and Reproducible Computational Projects☆12Jan 21, 2025Updated last year
- A collection of LUTs for ImageJ/Fiji☆75Jun 20, 2020Updated 5 years ago
- PC monitor brightness controller (control the actual monitor's backlight!) supports multi-monitor.☆10Oct 13, 2019Updated 6 years ago
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated last month
- ExTrack MLE for diffusive noisy single-particle tracks☆14Sep 13, 2025Updated 6 months ago
- This is a repository containing notebooks demonstrating along corresponding with YouTube videos, coding strategies to various problems.☆10Aug 23, 2021Updated 4 years ago
- ilastik plugin for napari☆14Mar 2, 2026Updated 2 weeks ago
- ☆15Updated this week
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- Implementation and analysis of Maximin Affinity of Image Segmentation☆13Jul 14, 2020Updated 5 years ago
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆23Updated this week
- Handmade ImageJ / Fiji LUTs for microscopy, scientific good visualization and art.☆13Jan 9, 2025Updated last year
- Fancier logging with python.☆16Mar 2, 2026Updated 2 weeks ago
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆16Jun 2, 2025Updated 9 months ago
- Workshop materials for "I2K 2022: From Images to Knowledge" conference☆11May 3, 2022Updated 3 years ago
- ☆24Jun 19, 2023Updated 2 years ago