Python and ImageJ scripts designed to track single cells and analyze fluorescence
☆15Dec 16, 2021Updated 4 years ago
Alternatives and similar repositories for CellTracking
Users that are interested in CellTracking are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell tracking using TensorFlow and BayesianTracker☆23Jan 17, 2022Updated 4 years ago
- Algorithm for round cells identification in the brightfield microscopy images.☆22Aug 19, 2023Updated 3 years ago
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- An LTI tool provider to run Numbas exams☆11Updated this week
- High-throughput droplet microfluidic devices with fluorescence detection systems provide several advantages over conventional end-point c…☆12Mar 6, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Dockerfile to build a working CellProfiler (http://cellprofiler.org/) image☆11Jun 2, 2022Updated 4 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 4 years ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆22Updated this week
- Single-cell fluorescence microscopy data analysis☆26Jul 22, 2021Updated 5 years ago
- (Biological) Cell Tracker for Microscopy Image Analysis☆15May 10, 2017Updated 9 years ago
- [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.☆10Jan 11, 2022Updated 4 years ago
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆22Jul 8, 2024Updated 2 years ago
- A repository for data package representation for cell tracking data☆13Apr 30, 2020Updated 6 years ago
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Apr 7, 2024Updated 2 years ago
- Lineage Mapper Fiji plugin and MATLAB source code☆19Aug 4, 2022Updated 4 years ago
- Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.☆18May 14, 2018Updated 8 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Jul 16, 2025Updated last year
- How-to: Pi-Hole + DNSCrypt + Anonymized DNS + Cloudflare DoH Setup on Raspberry Pi 4☆12Apr 1, 2020Updated 6 years ago
- Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nu…☆11Aug 19, 2020Updated 6 years ago
- Scripts to perform active learning as described in the referenced article.☆13Sep 17, 2025Updated 11 months ago
- This repository implements the Fast Iterative Method (FIM) for use in python☆14Apr 15, 2024Updated 2 years ago
- The next generation of EpiCollect, multiple forms, more fields and more control. We recommend using Apache 2.2 or later, PHP 5.3 or later…☆23Jul 5, 2017Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 2 months ago
- PC monitor brightness controller (control the actual monitor's backlight!) supports multi-monitor.☆10Oct 13, 2019Updated 6 years ago
- Managing Open and Reproducible Computational Projects☆12Jan 21, 2025Updated last year
- ExTrack MLE for diffusive noisy single-particle tracks☆16Jun 24, 2026Updated 2 months ago
- JupyterLab extension to open files passed via a URL parameter.☆15Aug 11, 2026Updated 2 weeks ago
- Workshop materials for "I2K 2022: From Images to Knowledge" conference☆11May 3, 2022Updated 4 years ago
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 5 months ago
- Open-source diode laser combiner, fiber launch, and sequencing controller for fluorescence microscopy☆55Dec 21, 2020Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A collection of LUTs for ImageJ/Fiji☆78Jun 20, 2020Updated 6 years ago
- SurGen: 1020 H&E-stained Whole Slide Images With Survival and Genetic Markers☆25Nov 2, 2025Updated 9 months ago
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Apr 12, 2022Updated 4 years ago
- This is a repository containing notebooks demonstrating along corresponding with YouTube videos, coding strategies to various problems.☆10Aug 23, 2021Updated 5 years ago
- ☆24Jun 19, 2023Updated 3 years ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- Python Client Package for WikiPathways☆28Mar 15, 2026Updated 5 months ago