MIC-DKFZ / napari-nninteractiveLinks
nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.
☆103Updated 2 months ago
Alternatives and similar repositories for napari-nninteractive
Users that are interested in napari-nninteractive are comparing it to the libraries listed below
Sorting:
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆53Updated last year
- Code for "FastSAM3D: An Efficient Segment Anything Model for 3D Volumetric Medical Images"☆104Updated 9 months ago
- uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)☆199Updated last week
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- A 3D Slicer extension for efficient segmentation with nnInteractive.☆121Updated 2 weeks ago
- nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and la…☆338Updated last month
- ☆92Updated 6 months ago
- Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration☆72Updated 2 months ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆260Updated last week
- A foundation model for universal 3D blood vessel segmentation. Paper accepted @ CVPR25.☆137Updated last month
- 3D Slicer extension for Segment Anything Model (SAM) developed by Meta☆68Updated 6 months ago
- Baseline methods, training scripts, and pretrained models for LUMIR challenge at Learn2Reg 2024☆31Updated 6 months ago
- SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI☆114Updated last year
- A library for performing image registration using deep learning, regularized by inverse consistency☆57Updated last month
- [ICLR 2025] Learning General-purpose Biomedical Volume Representations using Randomized Synthesis☆89Updated this week
- Skeleton segmentation in CT images☆28Updated 10 months ago
- Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix☆55Updated 3 weeks ago
- A Foundational Keypoint Model for Robust and Flexible Brain MRI Registration☆52Updated 5 months ago
- An abundance of augmentation layers☆17Updated 3 weeks ago
- ☆144Updated last week
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆81Updated last year
- Implementation of the DeepVesselNet deep learning network☆152Updated 2 years ago
- panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps☆27Updated 3 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆111Updated last week
- Easy Volumetric Segmentation with Deep Learning☆28Updated last month
- NeurIPS 2023 - Lung250M-4B: A Combined 3D Dataset for CT- and Point Cloud-Based Intra-Patient Lung Registration☆40Updated last year
- highest ranked algorithm of Learn2Reg requires little to no training and runs within seconds☆74Updated last month
- Segment anything with our Napari integration of Meta AI's Segment Anything Model (SAM)!☆243Updated last year
- Very fast greedy diffeomorphic registration code☆82Updated this week
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆54Updated last month