CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
☆32Apr 10, 2026Updated this week
Alternatives and similar repositories for civic-v2
Users that are interested in civic-v2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python interface for the CIViC db application☆12Updated this week
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 2 years ago
- Web client for CIViC: Clinical Interpretations of Variants in Cancer☆50Nov 28, 2023Updated 2 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Jun 10, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- Tool suite for HGVS variant descriptions☆48Feb 23, 2026Updated last month
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Apr 1, 2026Updated last week
- Repo for advertising and organizing CIViC unconference/meeting activities☆10Jul 24, 2025Updated 8 months ago
- ☆10Jan 25, 2019Updated 7 years ago
- Biomedical wordlists (of drugs, genes, etc) for several text mining projects☆19Apr 3, 2023Updated 3 years ago
- ☆13Jan 23, 2024Updated 2 years ago
- Providing interactions between drugs and genes sourced from a variety of publications and knowledgebases☆39Updated this week
- ☆14Mar 2, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆15Jun 2, 2021Updated 4 years ago
- ☆23Updated this week
- Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.☆22Jan 30, 2026Updated 2 months ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 3, 2026Updated last week
- A user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization fo…☆21Oct 27, 2022Updated 3 years ago
- VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations☆29Jan 13, 2026Updated 3 months ago
- Transcript versions for HGVS libraries☆35Apr 1, 2026Updated last week
- A virtualised HPC cluster based on SLURM and Rocky Linux 9☆76Nov 28, 2025Updated 4 months ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆40Jan 10, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated 2 months ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Curated list of resources for variant prioritization☆14Nov 18, 2025Updated 4 months ago
- ☆36Mar 16, 2021Updated 5 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- A list of resources for metadata tools, standards and/or development☆11Jun 20, 2018Updated 7 years ago
- Useful bash one-liners for bioinformatics.☆10Jun 26, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19Feb 20, 2018Updated 8 years ago
- Build SVG Custom User Interface in R, rmd, qmd and Shiny☆20Apr 10, 2025Updated last year
- BioContextAI Knowledgebase MCP server for biomedical agentic AI☆22Jan 12, 2026Updated 3 months ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated last month
- A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.☆29Jun 4, 2024Updated last year