CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
☆30Mar 20, 2026Updated this week
Alternatives and similar repositories for civic-v2
Users that are interested in civic-v2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python interface for the CIViC db application☆11Feb 19, 2026Updated last month
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 2 years ago
- Web client for CIViC: Clinical Interpretations of Variants in Cancer☆50Nov 28, 2023Updated 2 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Jun 10, 2024Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- Tool suite for HGVS variant descriptions☆48Feb 23, 2026Updated last month
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Mar 17, 2026Updated last week
- Repo for advertising and organizing CIViC unconference/meeting activities☆10Jul 24, 2025Updated 8 months ago
- ☆10Jan 25, 2019Updated 7 years ago
- Biomedical wordlists (of drugs, genes, etc) for several text mining projects☆19Apr 3, 2023Updated 2 years ago
- ☆13Jan 23, 2024Updated 2 years ago
- Faultless AST for Open Biomedical Ontologies.☆29Oct 25, 2025Updated 4 months ago
- ☆14Mar 2, 2026Updated 3 weeks ago
- ☆15Jun 2, 2021Updated 4 years ago
- ☆23Updated this week
- A functional profiler for metagenomes using FracMinHash☆21Jul 14, 2025Updated 8 months ago
- Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.☆21Jan 30, 2026Updated last month
- VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations☆27Jan 13, 2026Updated 2 months ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- A virtualised HPC cluster based on SLURM and Rocky Linux 9☆75Nov 28, 2025Updated 3 months ago
- Transcript versions for HGVS libraries☆35Oct 24, 2025Updated 5 months ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆40Jan 10, 2026Updated 2 months ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated last month
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 5 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Curated list of resources for variant prioritization☆14Nov 18, 2025Updated 4 months ago
- ☆36Mar 16, 2021Updated 5 years ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- ☆10Jan 21, 2023Updated 3 years ago
- ☆47Mar 5, 2026Updated 2 weeks ago
- A list of resources for metadata tools, standards and/or development☆11Jun 20, 2018Updated 7 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- ☆12Jan 9, 2023Updated 3 years ago
- Build SVG Custom User Interface in R, rmd, qmd and Shiny☆20Apr 10, 2025Updated 11 months ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- A GitHub action to install Nextflow☆28Updated this week