CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
☆32Jun 9, 2026Updated this week
Alternatives and similar repositories for civic-v2
Users that are interested in civic-v2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python interface for the CIViC db application☆13Updated this week
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 2 years ago
- Web client for CIViC: Clinical Interpretations of Variants in Cancer☆50Nov 28, 2023Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tool suite for HGVS variant descriptions☆50Apr 17, 2026Updated last month
- Cancer Predisposition Sequencing Reporter (CPSR)☆64Jun 2, 2026Updated last week
- Repo for advertising and organizing VICC, CGC, CIViC, & ClinGen Somatic: Variant Curation & Coding Unconference/meeting activities☆10Jun 2, 2026Updated last week
- ☆10Jan 25, 2019Updated 7 years ago
- Biomedical wordlists (of drugs, genes, etc) for several text mining projects☆19Apr 3, 2023Updated 3 years ago
- ☆13Jan 23, 2024Updated 2 years ago
- Faultless AST for Open Biomedical Ontologies.☆28Oct 25, 2025Updated 7 months ago
- ☆14May 18, 2026Updated 3 weeks ago
- ☆16Jun 2, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.☆22Jun 1, 2026Updated last week
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated last month
- Ａ user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization fo…☆21Oct 27, 2022Updated 3 years ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations☆31May 3, 2026Updated last month
- Transcript versions for HGVS libraries☆37Apr 1, 2026Updated 2 months ago
- A virtualised HPC cluster based on SLURM and Rocky Linux 9☆76Nov 28, 2025Updated 6 months ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆41Jan 10, 2026Updated 5 months ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆26Jan 28, 2026Updated 4 months ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- ☆37Mar 16, 2021Updated 5 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- ☆51May 26, 2026Updated 2 weeks ago
- A list of resources for metadata tools, standards and/or development☆12Jun 20, 2018Updated 7 years ago
- Useful bash one-liners for bioinformatics.☆10Jun 26, 2017Updated 8 years ago
- ☆12Jan 9, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Feb 20, 2018Updated 8 years ago
- Build SVG Custom User Interface in R, rmd, qmd and Shiny☆20Apr 10, 2025Updated last year
- BioContextAI Knowledgebase MCP server for biomedical agentic AI☆24Jan 12, 2026Updated 5 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆32Aug 26, 2024Updated last year
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated last year
- Pipeline for generating RNAseq-based cancer patient reports☆12Updated this week