griffithlab / civic-v2Links
CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
☆28Updated this week
Alternatives and similar repositories for civic-v2
Users that are interested in civic-v2 are comparing it to the libraries listed below
Sorting:
- TIDDIT - structural variant calling☆78Updated last month
- ☆27Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated 3 weeks ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆13Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆73Updated last month
- Platform for Oncogenomic Reporting and Interpretation (PORI)☆35Updated last month
- Python package to annotate and visualize gene fusions.☆65Updated last year
- VEP Plugin to annotate high-impact five prime UTR variants☆27Updated last year
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆97Updated this week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆37Updated last month
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆76Updated 3 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- FusionInspector code☆58Updated 3 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆69Updated 2 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated last month
- Tumor Mutational Burden☆63Updated 5 months ago
- ☆22Updated last month
- From QC to summary statistics☆17Updated 5 years ago
- Comprehensive analysis of small RNA sequencing data☆34Updated 7 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Updated 7 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Updated last month
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 months ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 7 months ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 6 months ago
- Clinical interpretation of somatic mutations in cancer☆50Updated 10 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆35Updated 3 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated last month