churchlandlab / wfield

Related projects: ⓘ

• churchlandlab / WidefieldImager
  Pre-processing pipeline for widefield data
  ☆10Updated 3 years ago
• int-brain-lab / ONE
  Open Neurophysiology Environment
  ☆16Updated this week
• buzsakilab / buzcode
  Code for internal lab sharing - polishing has started but is by no means complete
  ☆119Updated 9 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆115Updated 3 weeks ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆65Updated this week
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆41Updated last year
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆26Updated 4 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆122Updated 6 months ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆61Updated 3 weeks ago
• cwindolf / dartsort
  ☆18Updated 2 weeks ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆109Updated 2 weeks ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆80Updated last month
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆23Updated 2 weeks ago
• jenniferColonell / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆50Updated last month
• djoshea / neuropixel-utils
  Utilities for managing Neuropixel datasets and Kilosort results
  ☆44Updated last year
• BarbourLab / lussac
  Package for automatic post-processing and merging of multiple spike-sorting analyses.
  ☆24Updated 3 months ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆96Updated 3 weeks ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆91Updated 2 months ago
• Coen-Lab / chronic-neuropixels
  CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation
  ☆12Updated 2 months ago
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated last year
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆68Updated 3 weeks ago
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆28Updated 2 months ago
• cortex-lab / spikes
  cortex lab code for electrophysiology
  ☆72Updated 7 months ago
• ikinsella / locaNMF
  Pytorch implementation of LocaNMF
  ☆33Updated 4 years ago
• petersaj / AP_histology
  Histology processing
  ☆61Updated 6 months ago
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆35Updated 2 weeks ago
• cortex-lab / widefield
  Image processing and tools for widefield imaging
  ☆18Updated 4 years ago
• open-ephys / open-ephys-matlab-tools
  Matlab code for interacting with the Open Ephys GUI
  ☆11Updated last year
• SpikeInterface / spikeinterface-gui
  GUI for spikeinterface objects
  ☆21Updated this week