Tidy up computational biology objects
☆50Feb 1, 2019Updated 7 years ago
Alternatives and similar repositories for biobroom
Users that are interested in biobroom are comparing it to the libraries listed below
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆26Mar 15, 2023Updated 3 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- ☆43Apr 20, 2016Updated 9 years ago
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- A grammar of genomic data transformation☆154Updated this week
- Bioconductor cheat sheet☆191Aug 26, 2024Updated last year
- Response to blog post about Salmon☆37Sep 3, 2017Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- g-suite add-on for merging sheets data into docs templates☆11Jun 21, 2019Updated 6 years ago
- MSigDB gene sets for multiple organisms in a tidy data format☆85Mar 12, 2026Updated last week
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10May 29, 2024Updated last year
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- R/txshift: Efficient Estimation of the Causal Effects of Stochastic Interventions, with Corrections for Outcome-Dependent Sampling☆13Sep 21, 2024Updated last year
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 3 years ago
- Gene Set Enrichment Analysis Made Awesome☆12May 11, 2018Updated 7 years ago
- Transcript quantification import for modular pipelines☆142Sep 30, 2025Updated 5 months ago
- Computational Systems Biology course material☆12Dec 12, 2013Updated 12 years ago
- Open Retractions API client☆13Apr 16, 2017Updated 8 years ago
- logistic factor analysis☆16Jan 29, 2026Updated last month
- R data package for annotating/converting Gene IDs☆169Jul 6, 2025Updated 8 months ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Mar 15, 2023Updated 3 years ago
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆49Jan 1, 2020Updated 6 years ago
- Sankey Diagrams☆23Jan 15, 2016Updated 10 years ago
- R htmlwidget wrapper around the D3 scatterplot matrix☆10Feb 3, 2015Updated 11 years ago
- R package to calculate tide heights☆14Nov 20, 2024Updated last year
- Repository for signature genes from Immune Cell Atlas☆19Sep 25, 2019Updated 6 years ago
- Implementation of the matrixStats API for sparse matrices☆54Apr 2, 2025Updated 11 months ago
- Syntactic ggplot2 Sugar for a Tidy World☆26Sep 18, 2016Updated 9 years ago
- A collection of papers and books that Storey Lab members should read and others may find useful☆48Oct 19, 2015Updated 10 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 7 years ago
- ☆73Mar 1, 2019Updated 7 years ago
- An R package of utilities for benchmarking and optimization☆47Aug 11, 2023Updated 2 years ago
- Fast covariance, correlation, and cosine similarity.☆37Nov 23, 2021Updated 4 years ago
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 3 years ago
- htmlwidgets for comic (xkcd-like) R☆16Jul 21, 2016Updated 9 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- Clone identification from single-cell data☆63Nov 10, 2022Updated 3 years ago
- Links to slides for talks at the 2016 Joint Statistical Meetings in Chicago☆79Apr 25, 2022Updated 3 years ago